| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1443621 | 72 (0.380) | 21 (0.120) | 4/152 | NT | 22.7% | intergenic (‑194/+159) | USA300TCH1516_01342/brnQ_3 | hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein |
| ? | USA300TCH1516_ALE | 1910815 = | 75 (0.410) | intergenic (+348/‑207) | crcB_2/USA300TCH1516_01771 | Putative fluoride ion transporter CrcB/hypothetical protein | |||||
GCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1443531‑1443621‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaTTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTC > USA300TCH1516_ALE/1910815‑1910903 GCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACGCGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA < 1:3870641/91‑1GCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA > 2:3820566/1‑91GCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA > 2:2652902/1‑91GCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA > 2:2649272/1‑91GCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA < 2:1945386/91‑1 AATGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTG > 1:2776182/1‑91 AATGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTG > 1:2776672/1‑91 ATGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATAC‑TTTAAAAAAATAAGACACTTTG > 2:63437/1‑91 ATGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATAC‑TTTAAAAAAATAAGACACTTTG > 2:2396077/1‑91 ATGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTGAAATAC‑TTA‑AAAAAATAACACACTTTGC > 1:3712004/1‑91 ATGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGCATTAACATGTAATTTTACTTTGAAATAC‑TTTAAAAAAATAAGACACTTTG > 2:3199153/1‑91 TGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACGTGTAATTTTACTTTGAAATAC‑TTTAAAAAAATAAGACACTTTGC > 2:565208/1‑91 TGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTGAAATACTTTT‑AAAAAATAAGACACTTTGC > 2:2537960/1‑91 TGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTGAAATACTTTT‑AAAAAATAAGACACTTTGC > 2:3563102/1‑91 TGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTGAAATACTTTT‑AAAAAATAAGACACTTTGC > 2:3562869/1‑91 TGGCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTGAAATACTTTT‑AAAAAATAAGACACTTTGC > 2:2537938/1‑91 GCGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTGAAATAC‑TTTAAAAAAATAAGACACTTTGCCC > 2:1628468/1‑91 CGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTT‑AAAAAATAAGACACTTTGCCaa > 1:2484296/1‑89 CGAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATAC‑TTTAAAAAAATAAGACACTTTGGCCA > 1:788469/1‑91 GAGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATAC‑TTTAAAAAAATAAGACACTTTGGCCAA > 1:1742561/1‑91 AGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTGAAATACTTTT‑AAAAAATAAGACACTTTGCCCAAC > 1:969222/1‑91 AGACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTGAAATACTTTT‑AAAAAATAAGACACTTTGCCCAAC > 1:969198/1‑91 GACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATAC‑TTTAAAAAAATAAGACACTTTGGCCAACT > 1:1993990/1‑91 GACTCCTGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTTAAATAC‑TTTAAAAAAATAAGACACTTTGGCCAACT > 1:1993894/1‑91 TGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTT‑AAAAAATAAGACACTTTGC > 1:3831833/1‑79 TGAGGGAGCAGTGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTT‑AAAAAATAAGACACTTTGC < 2:3831833/79‑1 GCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACC < 2:3662284/91‑1 CCATTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCT > 1:2304552/1‑91 CCATTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCT < 1:851887/91‑1 CATTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTC < 2:3511214/91‑1 CATTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTC < 2:3641604/91‑1 CATTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTC > 2:1333869/1‑91 CATTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTC > 2:2321304/1‑91 GCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1443531‑1443621‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaTTAATACTACGTATTAACATGTAATTTTACTTTTACATAC‑TTT‑AAAAAATAAGACACTTTGCCCAACTTACACTACCAATAGAAACCTC > USA300TCH1516_ALE/1910815‑1910903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |