| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1443621 | 72 (0.380) | 21 (0.120) | 4/152 | NT | 22.7% | intergenic (‑194/+159) | USA300TCH1516_01342/brnQ_3 | hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein |
| ? | USA300TCH1516_ALE | 1910815 = | 75 (0.410) | intergenic (+348/‑207) | crcB_2/USA300TCH1516_01771 | Putative fluoride ion transporter CrcB/hypothetical protein | |||||
Only 100 of 115 total aligned reads displayed.
GCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATT > USA300TCH1516_ALE/1443531‑1443710 | gCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACGCGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA < 1:3870641‑M1/91‑1 (MQ=255)gCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA > 2:2652902‑M1/1‑91 (MQ=255)gCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA > 2:2649272‑M1/1‑91 (MQ=255)gCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCA > 2:3820566‑M1/1‑91 (MQ=255) cAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTACTGGCGAGACTCCTGAGGGAGCAGTGCCAg > 2:3195376/1‑91 (MQ=21) cAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGTGGGCGCATTGCCAg > 2:1281698/1‑91 (MQ=255) cAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAg < 2:2058880/91‑1 (MQ=34) cAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAg > 1:3187447/1‑91 (MQ=34) aGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCg > 2:1828285/1‑91 (MQ=34) aGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCg < 1:528556/91‑1 (MQ=33) gtgtCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTGATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGa < 1:3876235/91‑1 (MQ=21) gtgtCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTGATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGa < 1:3875737/91‑1 (MQ=21) gtgtCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGa < 1:1468356/91‑1 (MQ=34) tgtCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGaa < 2:2152119/91‑1 (MQ=34) gtCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAg > 2:1823168/1‑91 (MQ=34) tCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATGCGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGa > 2:2996101/1‑91 (MQ=21) tCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGa > 2:2999065/1‑91 (MQ=34) cTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAc > 2:900677/1‑91 (MQ=34) cTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAc > 2:2150454/1‑91 (MQ=34) cTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAc < 2:3700474/91‑1 (MQ=34) cTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAc > 2:901245/1‑91 (MQ=34) ttATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGGCTCCTGAGGGAGCAGTGCCAGTCGAAGAcc < 2:435567/91‑1 (MQ=21) ttATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAcc > 2:2962099/1‑91 (MQ=34) ttATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAcc > 1:2993761/1‑91 (MQ=34) ttATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAcc > 2:2962034/1‑91 (MQ=34) tATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCg < 2:1097594/91‑1 (MQ=33) aTTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGa < 2:3593139/91‑1 (MQ=34) tttttttAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAg < 1:417546/91‑1 (MQ=34) tttttgtAAAGTATTTCATAGTAAAATTACACGTTAATACGTAGTATTAATGGAGTGACTCAAGAGGGAGCAGTGCCAGTCGAAGACCGAg < 1:3243398/91‑1 (MQ=11) ttttttAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAgg > 2:909520/1‑91 (MQ=34) ttttAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCt > 2:81356/1‑91 (MQ=34) tttAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTg > 1:2604928/1‑91 (MQ=34) tttAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGACGCTg > 1:3229289/1‑91 (MQ=21) tttAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGACGCTg > 1:3228662/1‑91 (MQ=21) tAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgag < 1:2419956/91‑1 (MQ=34) tAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgag > 2:2036457/1‑91 (MQ=34) tAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgag < 2:3856414/91‑1 (MQ=33) aaaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgaga > 1:871713/1‑91 (MQ=34) aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 2:256417/1‑91 (MQ=34) aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 2:3626789/1‑91 (MQ=34) aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 2:3626799/1‑91 (MQ=34) aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 2:1677225/1‑91 (MQ=34) aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 1:108244/1‑91 (MQ=34) aaGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGAc > 1:1600691/1‑91 (MQ=34) aGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACg > 1:221806/1‑91 (MQ=34) aGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACg < 2:884106/91‑1 (MQ=34) tATTTCAAAGTANAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGc < 1:544830/91‑1 (MQ=21) ttCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCAcc < 2:2866888/91‑1 (MQ=33) ttCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCAcc > 1:3703076/1‑91 (MQ=34) cAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCt < 2:3237738/91‑1 (MQ=33) cAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCt > 2:1534347/1‑91 (MQ=34) cAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCt < 2:1867479/91‑1 (MQ=34) aaaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTa > 2:1623358/1‑91 (MQ=34) aaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAg > 2:471853/1‑91 (MQ=34) aaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAg > 2:472303/1‑91 (MQ=34) aaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAg < 2:680961/91‑1 (MQ=34) aaGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAg < 1:137293/91‑1 (MQ=34) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg < 1:1534347/91‑1 (MQ=34) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg < 1:3596719/91‑1 (MQ=34) aGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAgg > 2:1309752/1‑91 (MQ=34) gTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGa < 1:3194838/91‑1 (MQ=34) tAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGaa < 2:2828116/91‑1 (MQ=34) aaaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGaaa > 2:2518901/1‑91 (MQ=34) aaaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGaaa > 2:430890/1‑91 (MQ=34) aaaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGaaa > 1:1917407/1‑91 (MQ=34) aaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAg > 1:1485512/1‑91 (MQ=34) aaaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAg > 1:2733429/1‑91 (MQ=34) aaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGc < 1:81356/91‑1 (MQ=34) aaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGc > 2:2901900/1‑91 (MQ=34) aaTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGc < 1:188894/91‑1 (MQ=33) aTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGCAGACCGAGGCTGAGACGGCACCCTAGGAAAGCg > 1:324496/1‑91 (MQ=18) aTTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCg < 1:1050227/91‑1 (MQ=34) ttACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGa > 2:526326/1‑91 (MQ=34) ttACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGa > 2:2793294/1‑91 (MQ=34) acacGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAg < 2:3298125/91‑1 (MQ=34) cacGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGc < 2:1106220/91‑1 (MQ=33) cGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCa > 2:1255927/1‑91 (MQ=31) aaTGGCGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttacttttacatactttaaaaaataagacactttg > 1:2776182‑M1/1‑30 (MQ=255) aaTGGCGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttacttttacatactttaaaaaataagacactttg > 1:2776672‑M1/1‑30 (MQ=255) aTGGCGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttacttttaaatactttaaaaaaataagacactttg > 2:2396077‑M1/1‑29 (MQ=255) aTGGCGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttactttgaaatacttaaaaaaataacacactttgc > 1:3712004‑M1/1‑29 (MQ=255) aTGGCGAGACTCCTGAGGGAGCAGTGCCAttaatactacgcattaacatgtaattttactttgaaatactttaaaaaaataagacactttg > 2:3199153‑M1/1‑29 (MQ=255) tGGCGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacgtgtaattttactttgaaatactttaaaaaaataagacactttgc > 2:565208‑M1/1‑28 (MQ=255) tGGCGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttactttgaaatacttttaaaaaataagacactttgc > 2:3562869‑M1/1‑28 (MQ=255) tGGCGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttactttgaaatacttttaaaaaataagacactttgc > 2:2537960‑M1/1‑28 (MQ=255) tGGCGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttactttgaaatacttttaaaaaataagacactttgc > 2:2537938‑M1/1‑28 (MQ=255) gCGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttactttgaaatactttaaaaaaataagacactttgccc > 2:1628468‑M1/1‑26 (MQ=255) cGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttacttttacatacttttaaaaaataagacactttgccaa > 1:2484296‑M1/1‑25 (MQ=255) cGAGACTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttacttttaaatactttaaaaaaataagacactttggcca > 1:788469‑M1/1‑25 (MQ=255) agaCTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttactttgaaatacttttaaaaaataagacactttgcccaac > 1:969222‑M1/1‑23 (MQ=255) gaCTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttacttttaaatactttaaaaaaataagacactttggccaact > 1:1993894‑M1/1‑22 (MQ=255) gaCTCCTGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttacttttaaatactttaaaaaaataagacactttggccaact > 1:1993990‑M1/1‑22 (MQ=255) tGAGGGAGCAGTGCCAttaatactacgtattaacatgtaattttacttttacatacttttaaaaaataagacactttgc > 1:3831833‑M1/1‑16 (MQ=255) gCCAttaatactacgtattaacatgtaattttacttttacatactttaaaaaataagacactttgcccaacttacactaccaatagaaacc < 2:3662284‑M1/91‑88 (MQ=255) ccAttaatactacgtattaacatgtaattttacttttacatactttaaaaaataagacactttgcccaacttacactaccaatagaaacct < 1:851887‑M1/91‑89 (MQ=255) ccAttaatactacgtattaacatgtaattttacttttacatactttaaaaaataagacactttgcccaacttacactaccaatagaaacct > 1:2304552‑M1/1‑3 (MQ=255) cAttaatactacgtattaacatgtaattttacttttacatactttaaaaaataagacactttgcccaacttacactaccaatagaaacctc > 2:2321304‑M1/1‑2 (MQ=255) cAttaatactacgtattaacatgtaattttacttttacatactttaaaaaataagacactttgcccaacttacactaccaatagaaacctc < 2:3641604‑M1/91‑90 (MQ=255) cAttaatactacgtattaacatgtaattttacttttacatactttaaaaaataagacactttgcccaacttacactaccaatagaaacctc > 2:1333869‑M1/1‑2 (MQ=255) cAttaatactacgtattaacatgtaattttacttttacatactttaaaaaataagacactttgcccaacttacactaccaatagaaacctc < 2:3511214‑M1/91‑90 (MQ=255) | GCAAAGTGTCTTATTTTTTTAAAGTATTTCAAAGTAAAATTACACGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATT > USA300TCH1516_ALE/1443531‑1443710 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |