| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1494261 | 146 (0.770) | 18 (0.100) | 11/150 | NT | 12.0% | coding (7763/31266 nt) | ebh_1 | Extracellular matrix‑binding protein ebh |
| ? | USA300TCH1516_ALE | = 1494291 | 128 (0.720) | coding (7733/31266 nt) | ebh_1 | Extracellular matrix‑binding protein ebh | |||||
GTTCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1494167‑1494261‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTAG < USA300TCH1516_ALE/1494291‑1494202 GTTCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTA < 1:3333565/91‑1 TTCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAG < 2:5788/91‑1 TTCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAG < 2:3119141/91‑1 TTCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAG < 2:1989748/91‑1 TCACAGAACTTTGTAAGTTATTTTTTGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGT < 1:3599603/91‑1 CACAGAACTTTGTAAGTTATTTTTAGACGTTACTCATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTT > 1:1692008/1‑91 CACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTT < 1:1359061/91‑1 CACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTT < 1:1849908/91‑1 CACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTT > 2:2615693/1‑91 ACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT < 1:50659/91‑1 ACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT > 1:3560986/1‑91 ACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT < 1:2880029/91‑1 ACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT > 1:1546035/1‑91 TTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGACGCACTAACTAAAGT < 1:2072524/91‑1 TTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGT < 2:284955/91‑1 TAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCG < 2:2170038/91‑1 TAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCG < 1:1231961/91‑1 GTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAG < 2:884729/91‑1 TTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACTAACTAAAGTTCGTGCAGC < 1:746244/91‑1 TTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGC < 2:776424/91‑1 TTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGC < 1:1783585/91‑1 ACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCAC < 1:3043667/91‑1 ACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCAC < 1:3043652/91‑1 TAATTGGCTATTATCTTCTTTATTTTGAGGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAA < 2:1413791/91‑1 TAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAA < 2:371394/91‑1 TTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACT < 2:1736632/91‑1 GGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAA < 2:3507618/91‑1 GGCGATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAA < 1:3007433/91‑1 CTATTATCTTCTTTATTTTGAGGTAATGCTTTAGCTGGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGA < 2:3831974/91‑1 ATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATT < 2:240320/91‑1 TCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAG < 2:287767/91‑1 AGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAA > 1:2145588/1‑91 GTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAAT > 1:1419933/1‑91 TTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATT < 2:2835795/91‑1 TTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATT < 2:2081268/91‑1 TTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATT > 1:3839951/1‑91 TCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTAG < 1:1719719/91‑1 TCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTAG > 2:1719719/1‑91 GTTCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1494167‑1494261‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTAG < USA300TCH1516_ALE/1494291‑1494202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |