| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1533866 = | 159 (0.830) | 35 (0.210) | 15/138 | NT | 21.4% | coding (219/588 nt) | USA300HOU_RS07480 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1533900 = | 120 (0.730) | coding (185/588 nt) | USA300HOU_RS07480 | hypothetical protein | |||||
TGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1533966‑1533866‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAA > USA300TCH1516_ALE/1533900‑1533989 TGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGC > 1:1431642/1‑91TGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGC > 1:1431671/1‑91TGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGC > 1:1432450/1‑91TGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGC < 1:2933775/91‑1 GAATGAGGCGAGATTGGCAAACATTCAGTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAATTTGCGGAAGTGGGAAGTCACGCT < 2:362424/91‑1 GAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCT < 1:1172916/91‑1 GAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCT > 1:250611/1‑91 GAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCT < 1:1573947/91‑1 GAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCT < 1:1574131/91‑1 AATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTT > 1:705299/1‑91 AATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTT < 1:1368429/91‑1 AATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTT < 1:2397599/91‑1 AATGAGGCGAAAATGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTT < 1:2394934/91‑1 TGAGGCGAAATTGGCAAACATTCATTTTGTAGATACCAAAATTAATCATCATGAAACATTAGAAATGTCAGAAGTGGGAAGTCACGCTTCT > 2:3614783/1‑91 TGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCT < 1:1176319/91‑1 TGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCT > 2:1456560/1‑91 TGAGACGAAGTTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCT > 2:2542929/1‑91 GAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTG > 2:1540288/1‑91 GAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTG < 1:1468983/91‑1 GAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTG > 1:2419411/1‑91 GAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTG < 1:801211/91‑1 AGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATGATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 2:3482457/91‑1 AGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 2:1188443/91‑1 AGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 1:3488901/91‑1 AGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 2:1490586/91‑1 AGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 1:681184/91‑1 AGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 2:1185320/91‑1 AGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 2:1185231/91‑1 AGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGC < 1:2774426/91‑1 CGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAAT > 1:1809745/1‑91 GAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATT > 2:379539/1‑91 GGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAT < 1:3030898/91‑1 GGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAT < 1:3030887/91‑1 GCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATG < 1:1561870/91‑1 AACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT < 2:316924/91‑1 AACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTT < 2:316949/91‑1 TTTTGTAGATACAAAAATTAATCCTCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGA < 1:21837/91‑1 TTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGA < 1:1101952/91‑1 TTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGA < 1:2109854/91‑1 ATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCG > 1:1434285/1‑91 GCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCT > 1:95622/1‑91 CAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTC > 1:3052352/1‑91 CAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTC > 2:2057373/1‑91 CAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTC > 1:2097902/1‑91 AGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCA > 1:2409145/1‑91 AGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTC > 2:3208255/1‑91 GTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCA > 2:194422/1‑91 GTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCA > 2:846095/1‑91 GTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCA > 2:330803/1‑91 GTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCA > 1:945479/1‑91 TGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGCTGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCAC > 1:3267718/1‑91 TGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCAC > 1:1582419/1‑91 TGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCAC > 1:2745928/1‑91 GGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACT > 2:3236782/1‑91 GGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACT > 1:2270696/1‑91 GGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACT > 1:2270857/1‑91 GGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACT > 2:3236791/1‑91 GGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACT > 2:3324582/1‑91 GGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACT > 1:1763586/1‑91 GGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTCTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACT > 2:3414413/1‑91 GGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTT > 2:2335211/1‑91 GGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTT > 2:1469538/1‑91 GAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTT > 2:1668259/1‑91 GAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTT > 1:1991772/1‑91 GAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTT > 1:1991670/1‑91 AAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTT > 2:239063/1‑91 CTTCTGCAATTTCTAATGTTTCATGATGATTACTTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATAGAGTT > 2:1565665/1‑91 CTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAG > 2:1316297/1‑91 TGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGC < 1:3437064/91‑1 TGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGC < 1:2545588/91‑1 GCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCA < 2:426980/91‑1 GCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCA > 1:834738/1‑91 GCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCA > 2:1293790/1‑91 GCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCA < 1:684989/91‑1 CAATTTCTAATGTTTTATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAC < 1:2068166/91‑1 CAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAC < 1:327807/91‑1 CAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAC < 2:1866063/91‑1 ATTTCTAATGTTTCATGATGATTAATTTTTGTTTTTTCAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCC > 2:239978/1‑91 ATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCC > 2:238283/1‑91 ATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCC < 1:3674178/91‑1 TTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCA < 1:3652663/91‑1 TTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAA > 1:1516103/1‑91 TGAATGAGGCGAAATTGGCAAACATTCATTTTGTAGATACAAAAATTAATCATCATGAAACATTAGAAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1533966‑1533866‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAA > USA300TCH1516_ALE/1533900‑1533989 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |