New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1533866 =159 (0.830)35 (0.210) 15/138 NT 21.4% coding (219/588 nt) USA300HOU_RS07480 hypothetical protein
?USA300TCH1516_ALE 1533900 = 120 (0.730)coding (185/588 nt) USA300HOU_RS07480 hypothetical protein

Only 100 of 230 total aligned reads displayed.

TATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAA  >  USA300TCH1516_ALE/1533811‑1533989
                                                                                         |                                                                                         
tataATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTc                                                                                          >  2:538187/1‑91 (MQ=255)
tataATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTACAATTTc                                                                                          >  2:3448795/1‑91 (MQ=255)
 ataATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCt                                                                                         <  2:714665/91‑1 (MQ=255)
 ataATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCt                                                                                         >  1:1253526/1‑91 (MQ=255)
 ataATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCt                                                                                         >  2:2355110/1‑91 (MQ=255)
 ataATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCt                                                                                         >  1:2494620/1‑91 (MQ=255)
   aaTCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTaa                                                                                       <  1:814090/91‑1 (MQ=255)
    aTCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAAt                                                                                      >  1:556785/1‑91 (MQ=255)
     tCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATg                                                                                     >  1:2379943/1‑91 (MQ=255)
     tCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATg                                                                                     >  1:3682020/1‑91 (MQ=255)
      cAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGt                                                                                    >  1:755521/1‑91 (MQ=255)
      cAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGt                                                                                    >  1:3473971/1‑91 (MQ=255)
       aaaTATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGtt                                                                                   <  2:692222/91‑1 (MQ=255)
        aaTATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGttt                                                                                  >  2:2026597/1‑91 (MQ=255)
            tttCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCatg                                                                              >  1:1008505/1‑91 (MQ=255)
              tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCatgat                                                                            <  1:3191015/91‑1 (MQ=255)
              tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCatgat                                                                            <  2:1111033/91‑1 (MQ=255)
              tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCatgat                                                                            >  1:2035251/1‑91 (MQ=255)
              tCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCatgat                                                                            >  1:2142140/1‑91 (MQ=255)
                ttttgtagatacaaaaattaatcctcatgaaacattagaaattgcagaagcgtgacttcccacttctgcaattTCTAATGTTTCAtgatga                                                                          <  1:21837‑M2/18‑1 (MQ=255)
                ttttgtagatacaaaaattaatcatcatgaaacattagaaattgcagaagcgtgacttcccacttctgcaattTCTAATGTTTCAtgatga                                                                          <  1:1101952‑M2/18‑1 (MQ=255)
                  ttGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGAtt                                                                        >  2:2419411/1‑91 (MQ=255)
                     tATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAt                                                                     <  1:2029743/91‑1 (MQ=255)
                     tATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAt                                                                     >  2:3840908/1‑91 (MQ=255)
                     tATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAt                                                                     >  1:1902685/1‑91 (MQ=255)
                        tCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAtttt                                                                  >  2:2573130/1‑91 (MQ=255)
                        tCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAtttt                                                                  >  2:2127010/1‑91 (MQ=255)
                         cATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAttttt                                                                 >  1:1588966/1‑91 (MQ=255)
                          aTTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTg                                                                <  2:3383306/91‑1 (MQ=255)
                           ttAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGt                                                               <  1:3584894/91‑1 (MQ=255)
                             aaCTTTATATTACGCTTAGTAAATTGGATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTAt                                                             <  1:2010966/91‑1 (MQ=255)
                                tttATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTa                                                          <  2:2799974/91‑1 (MQ=255)
                                 ttATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTAc                                                         <  1:1693601/91‑1 (MQ=255)
                                  tataTTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACa                                                        <  2:3200719/91‑1 (MQ=255)
                                    tatTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACaaa                                                      >  1:1834745/1‑91 (MQ=255)
                                     tcatcatgaaacattagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACaaaa                                                     <  1:2109854‑M1/73‑1 (MQ=255)
                                       tACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAaatg                                                   <  1:3823034/91‑1 (MQ=255)
                                        aCGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAaatga                                                  >  1:897898/1‑91 (MQ=255)
                                          gCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAaatgaat                                                >  1:2760988/1‑91 (MQ=255)
                                             aaacattagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGtt                                             <  2:316949‑M1/81‑1 (MQ=255)
                                             aaacattagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGtt                                             <  2:316924‑M1/81‑1 (MQ=255)
                                              aGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGttt                                            >  1:2432494/1‑91 (MQ=255)
                                                tAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGc                                          <  2:2074175/91‑1 (MQ=255)
                                                tAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGc                                          <  1:3217335/91‑1 (MQ=255)
                                                tAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGc                                          <  1:3564600/91‑1 (MQ=255)
                                                cattagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGc                                          <  1:1561870‑M1/84‑1 (MQ=255)
                                                 attagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGcc                                         <  1:3030887‑M1/85‑1 (MQ=255)
                                                 attagaAATTGCAGAAGTGGGAAGTCACGCTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGcc                                         <  1:3030898‑M1/85‑1 (MQ=255)
                                                 aaaTTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAAt                                                                     >  2:3239356/1‑63 (MQ=255)
                                                 aaaTTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGcc                                         <  2:168793/91‑1 (MQ=255)
                                                 aaaTTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGcc                                         <  1:984299/91‑1 (MQ=255)
                                                  aattgaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCa                                        >  1:2617824/1‑91 (MQ=255)
                                                     tgaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTACTTTTTGTATCTACAAAATGAATGTTTGCCAAtt                                     >  2:1492221/1‑91 (MQ=255)
                                                      gaattgCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAAttt                                    <  2:1310929/91‑1 (MQ=255)
                                                       AATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTc                                   >  2:379539‑M1/1‑91 (MQ=255)
                                                        ATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCg                                  >  1:1809745‑M1/1‑91 (MQ=255)
                                                           gcagaagtgggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCt                               >  1:95622‑M2/31‑91 (MQ=255)
                                                           GCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCt                               <  2:1185231‑M1/91‑1 (MQ=255)
                                                           GCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCt                               <  2:1188443‑M1/91‑1 (MQ=255)
                                                           GCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCt                               <  2:1490586‑M1/91‑1 (MQ=255)
                                                           GCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCt                               <  1:681184‑M1/91‑1 (MQ=255)
                                                            cagaagtgggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTc                              >  1:3052352‑M2/30‑91 (MQ=255)
                                                            cagaagtgggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTc                              >  2:2057373‑M2/30‑91 (MQ=255)
                                                             agaagtgggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCa                             >  1:2409145‑M2/29‑91 (MQ=255)
                                                             AGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCa                             >  2:1456560‑M1/1‑91 (MQ=255)
                                                             AGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCa                             <  1:1176319‑M1/91‑1 (MQ=255)
                                                             AGAAGCGTGACTTCCCACTTCTGACATTTCTAATGTTTCATGATGATTAATTTTGGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCa                             >  2:3614783‑M1/1‑91 (MQ=255)
                                                               AAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCAtt                           >  1:705299‑M1/1‑91 (MQ=255)
                                                               AAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCAtt                           <  1:2397599‑M1/91‑1 (MQ=255)
                                                                agtgggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                          >  2:3208255‑M2/26‑91 (MQ=255)
                                                                AGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                          <  1:1573947‑M1/91‑1 (MQ=255)
                                                                AGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTc                          >  1:250611‑M1/1‑91 (MQ=255)
                                                                AGCGTGACTTCCCACTTCCGCAAATTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAACTGAATGTTTGCCAATCTCGCCTCATTc                          <  2:362424‑M1/91‑1 (MQ=255)
                                                                 gtgggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCa                         >  2:330803‑M2/25‑91 (MQ=255)
                                                                 gtgggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCa                         >  2:846095‑M2/25‑91 (MQ=255)
                                                                 gtgggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCa                         >  2:194422‑M2/25‑91 (MQ=255)
                                                                 GCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCa                         <  1:2933775‑M1/91‑1 (MQ=255)
                                                                 GCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCa                         >  1:1431642‑M1/1‑91 (MQ=255)
                                                                 GCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCa                         >  1:1432450‑M1/1‑91 (MQ=255)
                                                                  tgggaagtcacgcttctgcaattTCTAATGTTTCATGCTGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCAc                        >  1:3267718‑M2/24‑91 (MQ=255)
                                                                   gggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACt                       >  1:2270696‑M2/23‑91 (MQ=255)
                                                                   gggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACt                       >  2:3236782‑M2/23‑91 (MQ=255)
                                                                   gggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTCTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACt                       >  2:3414413‑M2/23‑91 (MQ=255)
                                                                    ggaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACtt                      >  2:2335211‑M2/22‑91 (MQ=255)
                                                                     gaagtcacgcttctgcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACttt                     >  1:1991670‑M2/21‑91 (MQ=255)
                                                                     gACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACttt                     <  1:2700810/91‑1 (MQ=255)
                                                                     gACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACttt                     <  2:3659882/91‑1 (MQ=255)
                                                                       cTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTta                   <  2:300934/91‑1 (MQ=255)
                                                                          cccACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTtatat                >  1:1114674/1‑91 (MQ=255)
                                                                          cccACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTtatat                >  1:3671258/1‑91 (MQ=255)
                                                                            cACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAg              <  2:3473971/91‑1 (MQ=255)
                                                                            cACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAg              >  2:1888108/1‑91 (MQ=255)
                                                                             aCTTCTGCAATTTCTAATGTTTCATGATGATAAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATACACTTTTATATAGt             >  1:3499771/1‑91 (MQ=255)
                                                                              cttctgcaattTCTAATGTTTCATGATGATTACTTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATAGAGtt            >  2:1565665‑M2/12‑91 (MQ=255)
                                                                                   gcaattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCa       >  1:834738‑M2/7‑91 (MQ=255)
                                                                                    caattTCTAATGTTTTATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAc      <  1:2068166‑M2/86‑1 (MQ=255)
                                                                                    caattTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAc      <  2:1866063‑M2/86‑1 (MQ=255)
                                                                                      attTCTAATGTTTCATGATGATTAATTTTTGTTTTTTCAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAccc    >  2:239978‑M2/4‑91 (MQ=255)
                                                                                      attTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCAccc    >  2:238283‑M2/4‑91 (MQ=255)
                                                                                        tTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCaa  >  1:1516103‑M2/2‑91 (MQ=255)
                                                                                         |                                                                                         
TATAATCAAATATTTCATTTGTATTCATTAACTTTATATTACGCTTAGTAAATTGAATTGCAGAAGCGTGACTTCCCACTTCTGCAATTTCTAATGTTTCATGATGATTAATTTTTGTATCTACAAAATGAATGTTTGCCAATTTCGCCTCATTCACTTTTATATAGTTAAGCACCCAA  >  USA300TCH1516_ALE/1533811‑1533989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.