| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1535925 | 175 (0.920) | 9 (0.050) | 8/144 | NT | 5.3% | coding (711/1299 nt) | aroA | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| ? | USA300TCH1516_ALE | = 1535948 | 163 (0.950) | coding (688/1299 nt) | aroA | 3‑phosphoshikimate 1‑carboxyvinyltransferase | |||||
AATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1535829‑1535925‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcagatTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATGTT < USA300TCH1516_ALE/1535948‑1535859 AATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCT > 2:2020523/1‑91AATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCT > 1:1594685/1‑91AATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCT > 1:17880/1‑91AATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCT < 2:1170134/91‑1AATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCT > 2:2851827/1‑91AATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCT < 2:3478566/91‑1AATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACACCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCT > 2:1818887/1‑91 ATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTG < 2:19724/91‑1 TAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGC > 1:1428545/1‑91 TAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGC > 1:3293299/1‑91 TAATACCTGAACGTCTTGGATTGGTTCCAACATTATGAATTGTGACATCATTTCATGGTGTGATAAGTGCTGCAACAATAAAGTACGCTGC < 2:3606992/91‑1 AATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCCGGAGTGATAAGTGCTGCAACAATAAAGAACGCTGCA > 2:17024/1‑91 TACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGA < 1:1418193/91‑1 TACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGA < 2:1150934/91‑1 ACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGAT > 2:2579739/1‑91 TCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATT < 2:464840/91‑1 CCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTT < 1:3366405/91‑1 CAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTC < 2:55138/91‑1 AACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCA < 1:2313921/91‑1 ACATTATTAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCAT < 2:3453532/91‑1 ACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCAT < 1:2496646/91‑1 TGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAG < 1:1432459/91‑1 GAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGC < 1:815043/91‑1 ATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGT < 1:196499/91‑1 TGCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCAT < 1:1389700/91‑1 GCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGATGTGATGTAACAATTCATA > 2:755811/1‑91 GCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATA > 2:2029020/1‑91 GCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATA < 1:276389/91‑1 CAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAA > 2:2783865/1‑91 CAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAA < 2:3364823/91‑1 AGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAAT < 1:509546/91‑1 AGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATT > 1:853940/1‑85 AGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATT < 2:853940/85‑1 GATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATG > 2:2552727/1‑91 GATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATG > 2:1151209/1‑91 GATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATG < 1:2231260/91‑1 ATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATGT > 2:398764/1‑91 ATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATGT < 1:1340340/91‑1 TTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATGTT > 2:453973/1‑91 AATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1535829‑1535925‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcagatTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATGTT < USA300TCH1516_ALE/1535948‑1535859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |