BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1535925	175 (0.920)	9 (0.050)	8/144	NT	5.3%	coding (711/1299 nt)	aroA	3‑phosphoshikimate 1‑carboxyvinyltransferase
*	?	USA300TCH1516_ALE	= 1535948	163 (0.950)	9 (0.050)	8/144	NT	5.3%	coding (688/1299 nt)	aroA	3‑phosphoshikimate 1‑carboxyvinyltransferase

Only 100 of 253 total aligned reads displayed.

ACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATT  >  USA300TCH1516_ALE/1535835‑1536015

 ccTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATg                                                                                           <  1:1065282/91‑1 (MQ=255)

 ccTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATg                                                                                           <  1:1007865/91‑1 (MQ=255)

 ccTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATg                                                                                           >  2:3564902/1‑91 (MQ=255)

 ccTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATg                                                                                           <  2:526112/91‑1 (MQ=255)

   tGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGaa                                                                                         >  1:282127/1‑91 (MQ=255)

   tGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGaa                                                                                         <  1:3151558/91‑1 (MQ=255)

   tGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGaa                                                                                         <  2:1445130/91‑1 (MQ=255)

    gAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGaaa                                                                                        >  2:1571968/1‑91 (MQ=255)

     aaCGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAat                                                                                       >  1:3863879/1‑91 (MQ=255)

          gtTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGc                                                                                  >  1:1972742/1‑91 (MQ=255)

          gtTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGc                                                                                  >  2:2548126/1‑91 (MQ=255)

          gtTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGc                                                                                  <  1:2221349/91‑1 (MQ=255)

           ttGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGcc                                                                                 <  2:2791654/91‑1 (MQ=255)

           ttGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTAATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGcc                                                                                 <  1:2655148/91‑1 (MQ=255)

              gattgattCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAgg                                                                              <  1:122034/91‑1 (MQ=255)

                ttgattCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGaa                                                                            <  2:1428545/91‑1 (MQ=255)

                  gattCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACa                                                                          >  2:1159331/1‑91 (MQ=255)

                    ttCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATg                                                                        <  2:1886305/91‑1 (MQ=255)

                    ttCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATg                                                                        <  2:729551/91‑1 (MQ=255)

                    atCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACaaa                                                                        >  1:1674724/2‑89 (MQ=255)

                     tacAATATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCATATGAAATATCGCCAGGAACATGa                                                                       <  2:421166/89‑1 (MQ=255)

                     tCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGa                                                                       <  2:2401669/91‑1 (MQ=255)

                     tCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGa                                                                       <  1:461723/91‑1 (MQ=255)

                       cAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATtttcatgttcctggcgatatttc                                                                     <  2:55138‑M1/91‑24 (MQ=255)

                         aCATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAat                                                                   <  1:1340340‑M2/91‑3 (MQ=255)

                         aCATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAat                                                                   >  2:398764‑M2/1‑89 (MQ=255)

                          cATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatc                                                                  >  2:2552727‑M2/1‑88 (MQ=255)

                             tATGAATTGTTACATCACATCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatctgc                                                               >  2:755811‑M2/1‑85 (MQ=255)

                                gAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATtttcatgttcctggcgatatttcatctgcagc                                                            <  1:815043‑M1/91‑33 (MQ=255)

                                gAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAgg                                                            >  2:1635085/1‑91 (MQ=255)

                                gAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAgg                                                            >  2:1796783/1‑91 (MQ=255)

                                 aaTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCGGGAACATGAAAATCTGCAGGt                                                           >  2:3323522/1‑91 (MQ=255)

                                 aaTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGt                                                           >  2:1295204/1‑91 (MQ=255)

                                  aTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAGCGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGtt                                                          <  1:3482189/91‑1 (MQ=255)

                                  aTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATtttcatgttcctggcgatatttcatctgcagcgt                                                          <  1:196499‑M1/91‑35 (MQ=255)

                                  aTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGtt                                                          >  2:3041721/1‑91 (MQ=255)

                                  aTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGtt                                                          <  2:2050735/91‑1 (MQ=255)

                                   ttGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGttt                                                         >  1:2037417/1‑91 (MQ=255)

                                     gTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTaa                                                       <  1:2060910/91‑1 (MQ=255)

                                     gTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTaa                                                       <  2:2439958/91‑1 (MQ=255)

                                      ttACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAAt                                                      <  1:679725/91‑1 (MQ=255)

                                       tACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATg                                                     <  2:3862807/91‑1 (MQ=255)

                                        aCATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCTAGGAACATGAAAATCTGCAGGTTTAATGt                                                    <  2:3371684/91‑1 (MQ=255)

                                        aCATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGt                                                    <  2:870308/91‑1 (MQ=255)

                                               ttCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAAt                                             <  1:1466897/91‑1 (MQ=255)

                                               ttCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAAt                                             >  1:918194/1‑91 (MQ=255)

                                                tCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAAtt                                            <  1:14267/91‑1 (MQ=255)

                                                 ccTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTg                                           <  1:3669748/91‑1 (MQ=255)

                                                  cTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGc                                          >  1:228276/1‑91 (MQ=255)

                                                   tGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCt                                         >  1:2308722/1‑91 (MQ=255)

                                                    ggTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCtt                                        >  1:2915186/1‑91 (MQ=255)

                                                     gtgtGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGACAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTc                                       >  1:3878590/1‑91 (MQ=255)

                                                      tgtgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCa                                      <  2:2875409/91‑1 (MQ=255)

                                                       gtgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAg                                     <  2:462108/91‑1 (MQ=255)

                                                        tgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgg                                    <  1:2796670/91‑1 (MQ=255)

                                                          aTAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgggg                                  <  2:252418/91‑1 (MQ=255)

                                                           tAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGt                                 <  1:3590216/91‑1 (MQ=255)

                                                           tAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGt                                 <  1:3590393/91‑1 (MQ=255)

                                                           tAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGt                                 <  2:220128/91‑1 (MQ=255)

                                                              gTGCTGCAACAATAAAGACCGCCGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGt                              <  1:2557607/91‑1 (MQ=255)

                                                                 ctgtAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTAtt                           <  1:3010910/91‑1 (MQ=255)

                                                                 ctgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTAtt                           >  2:1749987/1‑91 (MQ=255)

                                                                 ctgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTAtt                           >  1:1802356/1‑91 (MQ=255)

                                                                   gcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTaa                         >  1:2444236/1‑91 (MQ=255)

                                                                   gcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTaa                         <  2:2725596/91‑1 (MQ=255)

                                                                     aacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAtt                       >  2:2150819/1‑91 (MQ=255)

                                                                      acaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTg                      <  1:3762185/91‑1 (MQ=255)

                                                                      acaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTg                      <  1:1813912/91‑1 (MQ=255)

                                                                       caaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGa                     >  2:2274641/1‑91 (MQ=255)

                                                                        aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGAt                    <  1:2234904/91‑1 (MQ=255)

                                                                        aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGCTGTATTAATTGAt                    >  1:3219330/1‑91 (MQ=255)

                                                                         aTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATa                   <  1:2717585/91‑1 (MQ=255)

                                                                          tAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATaa                  >  1:1129742/1‑91 (MQ=255)

                                                                          tAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATaa                  <  1:1332047/91‑1 (MQ=255)

                                                                          tAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATaa                  >  2:2816721/1‑91 (MQ=255)

                                                                            aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                <  2:3641162/91‑1 (MQ=255)

                                                                            aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                >  2:2734514/1‑91 (MQ=255)

                                                                            aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                >  1:2729988/1‑91 (MQ=255)

                                                                                aCGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTc            >  1:531655/1‑91 (MQ=255)

                                                                                  gCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTg          <  1:310716/91‑1 (MQ=255)

                                                                                   cTGCAGATGAAATATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattca         <  1:1432459‑M2/91‑61 (MQ=255)

                                                                                   cTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGc         >  1:3371293/1‑91 (MQ=255)

                                                                                   cTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGc         <  2:2527573/91‑1 (MQ=255)

                                                                                    tGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCt        >  2:789928/1‑91 (MQ=255)

                                                                                     gCAGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcata       <  1:276389‑M1/91‑86 (MQ=255)

                                                                                     gCAGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcata       >  2:2029020‑M1/1‑6 (MQ=255)

                                                                                     gCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCtt       >  1:2463618/1‑91 (MQ=255)

                                                                                     gCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCtt       >  1:3630927/1‑91 (MQ=255)

                                                                                     gCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATCGATAACCCTTCTGCtt       >  2:3702028/1‑91 (MQ=255)

                                                                                      cAGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataa      >  2:2783865‑M1/1‑5 (MQ=255)

                                                                                      cAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCAGCTTc      >  2:3575249/1‑91 (MQ=255)

                                                                                       aGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataat     <  1:509546‑M1/91‑88 (MQ=255)

                                                                                       aGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaatt           >  1:853940‑M1/1‑4 (MQ=255)

                                                                                       aGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaatt           <  2:853940‑M1/85‑82 (MQ=255)

                                                                                       aGATGAAATATCGCCAGGAACATGACAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCa     <  1:3612128/91‑1 (MQ=255)

                                                                                        gATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataatg    >  2:1151209‑M1/1‑3 (MQ=255)

                                                                                        gATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATGGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCaa    <  2:969054/91‑1 (MQ=255)

                                                                                         aTGAAATATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataatgt   <  1:2496646‑M2/91‑67 (MQ=255)

                                                                                         aTGAAATATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattaataatgt   <  2:3453532‑M2/91‑67 (MQ=255)

                                                                                          tGAAATATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataatgtt  <  1:2313921‑M2/91‑68 (MQ=255)

ACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATT  >  USA300TCH1516_ALE/1535835‑1536015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.