BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1535925	175 (0.920)	9 (0.050)	8/144	NT	5.3%	coding (711/1299 nt)	aroA	3‑phosphoshikimate 1‑carboxyvinyltransferase
*	?	USA300TCH1516_ALE	= 1535948	163 (0.950)	9 (0.050)	8/144	NT	5.3%	coding (688/1299 nt)	aroA	3‑phosphoshikimate 1‑carboxyvinyltransferase

Only 100 of 216 total aligned reads displayed.

CAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGAACAT  >  USA300TCH1516_ALE/1535858‑1536038

cAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGaaa                                                                                            <  2:2816287/91‑1 (MQ=255)

  aCATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAat                                                                                          >  2:398764‑M2/1‑89 (MQ=255)

   cATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatc                                                                                         >  2:2552727‑M2/1‑88 (MQ=255)

   cATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatc                                                                                         >  2:1151209‑M2/1‑88 (MQ=255)

    aTTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatct                                                                                        <  1:509546‑M2/91‑5 (MQ=255)

      tATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatctgc                                                                                      >  2:2029020‑M2/1‑85 (MQ=255)

       aTGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatctgca                                                                                     <  1:1389700‑M2/91‑8 (MQ=255)

         gAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAgg                                                                                   >  2:1635085/1‑91 (MQ=255)

         gAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAgg                                                                                   >  2:1796783/1‑91 (MQ=255)

         gAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAgg                                                                                   >  1:1462732/1‑91 (MQ=255)

          aaTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatct                                                                                        <  2:853940‑M2/85‑5 (MQ=255)

           aTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAGCGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGtt                                                                                 <  1:3482189/91‑1 (MQ=255)

           aTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGtt                                                                                 <  2:2917398/91‑1 (MQ=255)

           aTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGtt                                                                                 >  2:3041721/1‑91 (MQ=255)

            ttGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGttt                                                                                >  1:2037417/1‑91 (MQ=255)

              gTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTaa                                                                              <  2:2181574/91‑1 (MQ=255)

               ttACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAAt                                                                             <  2:742251/91‑1 (MQ=255)

               ttACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAAt                                                                             <  1:679725/91‑1 (MQ=255)

                tACATCACTTCCTGGTGTGATAAGTGTTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATg                                                                            <  1:3643818/91‑1 (MQ=255)

                 aCATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCTAGGAACATGAAAATCTGCAGGTTTAATGt                                                                           <  2:3371684/91‑1 (MQ=255)

                 aCATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGt                                                                           >  1:3142935/1‑91 (MQ=255)

                   aTCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTAt                                                                         <  2:2343820/91‑1 (MQ=255)

                    tCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATc                                                                        <  1:1790415/91‑1 (MQ=255)

                       cTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGaa                                                                     <  1:2208113/91‑1 (MQ=255)

                        ttCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAAt                                                                    >  1:359721/1‑91 (MQ=255)

                        ttCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAAt                                                                    >  1:918194/1‑91 (MQ=255)

                          ccTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTg                                                                  >  1:3776495/1‑91 (MQ=255)

                           cTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGc                                                                 >  1:228276/1‑91 (MQ=255)

                            tGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCt                                                                >  1:2308722/1‑91 (MQ=255)

                              gtgtGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTc                                                              <  1:1041105/91‑1 (MQ=255)

                                gtgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAg                                                            <  2:462108/91‑1 (MQ=255)

                                 tgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgg                                                           <  1:2796357/91‑1 (MQ=255)

                                    tAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGt                                                        <  1:3590216/91‑1 (MQ=255)

                                          ctgtAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTAtt                                                  <  1:3010910/91‑1 (MQ=255)

                                          ctgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTAtt                                                  <  2:539130/91‑1 (MQ=255)

                                          ctgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTAtt                                                  >  2:1749987/1‑91 (MQ=255)

                                           tgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTa                                                 >  1:3099866/1‑91 (MQ=255)

                                            gcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCt                                                                <  2:1558488/75‑1 (MQ=255)

                                            gcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCt                                                                >  1:1558488/1‑75 (MQ=255)

                                            gcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTaa                                                >  2:2255185/1‑91 (MQ=255)

                                            gcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTaa                                                <  2:2725596/91‑1 (MQ=255)

                                            gcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTaa                                                >  1:2444236/1‑91 (MQ=255)

                                             caacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAt                                               >  2:3540862/1‑91 (MQ=255)

                                             caacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAt                                               <  2:1371316/91‑1 (MQ=255)

                                              aacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAtt                                              >  2:2150819/1‑91 (MQ=255)

                                               acaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTg                                             <  2:900497/91‑1 (MQ=255)

                                                caaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGa                                            <  1:1108865/91‑1 (MQ=255)

                                                caaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGa                                            <  1:3564780/91‑1 (MQ=255)

                                                 aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGAt                                           >  1:2879962/1‑91 (MQ=255)

                                                 aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGAt                                           <  1:2234904/91‑1 (MQ=255)

                                                 aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGCTGTATTAATTGAt                                           >  1:3219330/1‑91 (MQ=255)

                                                   tAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATaa                                         >  1:1925635/1‑91 (MQ=255)

                                                   tAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATaa                                         >  1:1812770/1‑91 (MQ=255)

                                                   tAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATaa                                         <  1:1332047/91‑1 (MQ=255)

                                                   tAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATaa                                         >  1:1129742/1‑91 (MQ=255)

                                                    aaaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAc                                        <  2:276389/91‑1 (MQ=255)

                                                    aaaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAc                                        >  2:3701311/1‑91 (MQ=255)

                                                     aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                                       >  2:2734514/1‑91 (MQ=255)

                                                     aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                                       <  1:844086/91‑1 (MQ=255)

                                                     aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                                       >  1:2729988/1‑91 (MQ=255)

                                                       gAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCt                                     >  1:448338/1‑91 (MQ=255)

                                                        aaCGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGt                                                        >  2:2819843/1‑71 (MQ=255)

                                                        aaCGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGt                                                        <  1:2819843/71‑1 (MQ=255)

                                                         aCGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTc                                   <  1:2586871/91‑1 (MQ=255)

                                                         aCGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTc                                   >  1:531655/1‑91 (MQ=255)

                                                          cGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCt                                  >  1:1282656/1‑91 (MQ=255)

                                                          cGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCt                                  <  2:2506628/91‑1 (MQ=255)

                                                            cTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGc                                <  2:252684/91‑1 (MQ=255)

                                                             tGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCt                               >  2:789928/1‑91 (MQ=255)

                                                              gCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCtt                              >  1:3630927/1‑91 (MQ=255)

                                                              gCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCtt                              >  1:2463618/1‑91 (MQ=255)

                                                               cAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTc                             >  2:3611824/1‑91 (MQ=255)

                                                               cAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCAGCTTc                             >  2:3575249/1‑91 (MQ=255)

                                                                aGATGAAATATCGCCAGGAACATGACAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCa                            <  1:3612128/91‑1 (MQ=255)

                                                                 gATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATGGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCaa                           <  2:969054/91‑1 (MQ=255)

                                                                 gATGAAATATCGCCAGGAACATGAAAATCTGCAGGCTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCaa                           >  2:801576/1‑91 (MQ=255)

                                                                  aTGAAATATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataatgt                          <  1:2496646‑M2/91‑67 (MQ=255)

                                                                    gAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTg                        <  1:2319697/91‑1 (MQ=255)

                                                                     aaaTATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataatgttgg                       <  1:3366405‑M2/91‑70 (MQ=255)

                                                                      aaTATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGa                      <  2:550832/91‑1 (MQ=255)

                                                                       atatCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGaa                     <  1:1825667/91‑1 (MQ=255)

                                                                          tCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAatat                  >  2:2863508/1‑91 (MQ=255)

                                                                          tCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAatat                  <  2:3213513/91‑1 (MQ=255)

                                                                           cGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATAtt                 >  1:3756554/1‑91 (MQ=255)

                                                                            gCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTa                >  1:274149/1‑91 (MQ=255)

                                                                            gCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTa                <  2:2402523/91‑1 (MQ=255)

                                                                            gCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTa                >  1:994556/1‑91 (MQ=255)

                                                                             ccAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTaa               >  1:1430749/1‑91 (MQ=255)

                                                                              cAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTaaa              >  1:3673283/1‑91 (MQ=255)

                                                                              cAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTaaa              >  1:2224860/1‑91 (MQ=255)

                                                                              cAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTaaa              <  1:2101774/91‑1 (MQ=255)

                                                                              cAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTaaa              <  1:748510/91‑1 (MQ=255)

                                                                                  aaCATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGt          >  2:1929127/1‑91 (MQ=255)

                                                                                      tGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGa      <  2:3611475/91‑1 (MQ=255)

                                                                                      tGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGa      <  2:3850532/91‑1 (MQ=255)

                                                                                      tGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGa      <  2:2224860/91‑1 (MQ=255)

                                                                                       gAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGaa     <  2:1213947/91‑1 (MQ=255)

                                                                                        aaaaTCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGAAc    >  2:2529205/1‑91 (MQ=255)

                                                                                        aaaaTCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAAGGTTTGAAc    <  2:1413034/91‑1 (MQ=255)

                                                                                          aaTCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATAAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGAACAt  <  2:436815/91‑1 (MQ=255)

CAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGAACAT  >  USA300TCH1516_ALE/1535858‑1536038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.