| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1539773 | 162 (0.850) | 10 (0.060) | 8/148 | NT | 5.8% | coding (373/450 nt) | ndk | Nucleoside diphosphate kinase |
| ? | USA300TCH1516_ALE | = 1539799 | 177 (1.010) | coding (347/450 nt) | ndk | Nucleoside diphosphate kinase | |||||
AGGTTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1539678‑1539773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcacgGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGATGCAT < USA300TCH1516_ALE/1539799‑1539710 AGGTTTACAGTTTCTATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATT < 1:3882122/91‑1AGGTTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATT < 2:3206161/91‑1AGGTTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATT < 2:1804317/91‑1AGGTTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATT < 1:3347550/91‑1 GGTTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTT > 2:2318736/1‑91 GTTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTC > 2:1639642/1‑91 GTTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTC > 1:329278/1‑91 GTTTACAGTTTATATTTTATTCATATAACCATGCATCACGTCGTGAAGCATAGCTAGTTATTTCATTTTCATTAAACCATAGATTAATTTt > 2:737608/1‑90 TTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCA > 1:1579944/1‑91 TTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCA > 2:3309831/1‑91 TTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCA > 2:3492691/1‑91 TTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCA > 2:1548815/1‑91 TTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCA > 2:3874311/1‑91 TTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCA > 2:3874237/1‑91 TACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTTAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACG < 2:3419282/91‑1 TACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACG < 1:1851783/91‑1 TACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACG > 2:3114001/1‑91 TACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACG < 2:3743374/91‑1 AACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCAC‑GTTCAGATTCATTAGAGTCTGCTG < 1:985583/91‑1 CCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGGTTCAGATTCATTAGAGTCTGCTGA < 1:3454092/91‑1 TCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAA < 1:2006221/91‑1 CACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAA < 2:2529434/91‑1 ACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAAT < 1:2819889/91‑1 ACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAAT < 1:2814610/91‑1 CGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATT < 1:935342/91‑1 TGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAA < 1:3169004/91‑1 GCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGG < 2:3831450/91‑1 GCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGG < 2:3831519/91‑1 TTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGA < 2:1029126/91‑1 TTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGA < 2:2478780/91‑1 TTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGA > 1:414945/1‑91 TTCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATATATGGCTTAATGAAAATGAAATTAATAGCTATGCTTCACCACGTGA > 1:1154177/1‑91 TCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGAT > 2:1654509/1‑91 TCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGAT > 1:3562295/1‑91 TCACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGAT < 1:2486527/91‑1 TCACGGTTCAGATTCAGTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGAT < 2:275962/91‑1 CACGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGATG < 1:744200/91‑1 CGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGATGCA < 2:2656731/91‑1 CGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGATGCA < 2:3626601/91‑1 CGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGATGCA < 2:2557252/91‑1 CGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGATGCA < 2:1316696/91‑1 CGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGATGCA < 1:24324/91‑1 CGGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTAAAATAAAAAGAAAATGAAATTACTAGCTATGCTTCACCACGTGATGCA < 2:3625339/91‑1 GGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGATGCAT > 2:754741/1‑91 AGGTTTACAGTTTATATTTTATTCATATAACCATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1539678‑1539773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcacgGTTCAGATTCATTAGAGTCTGCTGAACGTGAAATTAATCTATGGTTTAATGAAAATGAAATTACTAGCTATGCTTCACCACGTGATGCAT < USA300TCH1516_ALE/1539799‑1539710 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |