BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1539773	162 (0.850)	10 (0.060)	8/148	NT	5.8%	coding (373/450 nt)	ndk	Nucleoside diphosphate kinase
*	?	USA300TCH1516_ALE	= 1539799	177 (1.010)	10 (0.060)	8/148	NT	5.8%	coding (347/450 nt)	ndk	Nucleoside diphosphate kinase

Only 100 of 235 total aligned reads displayed.

ATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCAATAATAT  >  USA300TCH1516_ALE/1539710‑1539889

aTGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACc                                                                                           >  2:754741‑M2/1‑90 (MQ=255)

 tGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCTTTTTATTTTAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACcg                                                                                          <  2:3625339‑M2/91‑3 (MQ=255)

 tGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACcg                                                                                          <  1:24324‑M2/91‑3 (MQ=255)

    aTCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACcgtga                                                                                       <  1:2486527‑M2/91‑6 (MQ=255)

    aTCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACcgtga                                                                                       >  2:1654509‑M2/1‑86 (MQ=255)

     tCACGTGGTGAAGCATAGCTATTAATTTCATTTTCATTAAGCCATATATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACcgtgaa                                                                                      >  1:1154177‑M2/1‑85 (MQ=255)

     tCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACcgtgaa                                                                                      >  1:414945‑M2/1‑85 (MQ=255)

       aCGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATg                                                                                    >  2:2884280/1‑91 (MQ=255)

        cGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGa                                                                                   <  1:918085/91‑1 (MQ=255)

        cGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGa                                                                                   <  2:2608628/91‑1 (MQ=255)

        cGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGa                                                                                   <  1:3841066/91‑1 (MQ=255)

          tggtgAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGata                                                                                 >  1:834505/1‑91 (MQ=255)

            gtgAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATAtt                                                                               >  2:1233150/1‑91 (MQ=255)

            gtgAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATAtt                                                                               >  2:2382437/1‑91 (MQ=255)

              gAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTc                                                                             >  1:2227080/1‑91 (MQ=255)

               atgCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAACCTGAACCGTGAATGATATTTCt                                                                            >  2:3129555/3‑91 (MQ=255)

                   aTAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCa                                                                        <  2:808370/91‑1 (MQ=255)

                      gCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACa                                                                     <  1:3151760/91‑1 (MQ=255)

                       cTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAg                                                                    >  2:3393438/1‑91 (MQ=255)

                        tAGTGATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGt                                                                   <  1:3230020/91‑1 (MQ=255)

                        tAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGt                                                                   <  2:1429494/91‑1 (MQ=255)

                        tAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGt                                                                   <  1:131056/91‑1 (MQ=255)

                         aGTAATTTCATTTTCATTAAACCATTGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGtt                                                                  <  1:3597119/91‑1 (MQ=255)

                          gTAATTTCATTTTCATTATACCATAGACTAATTTCACTTTCAGCAGACTCTAATGAACCTGAACCGTGAATGATACTGCTACCAACAGttc                                                                 >  2:1320620/1‑90 (MQ=255)

                          gTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTa                                                                 >  2:584918/1‑91 (MQ=255)

                          gTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTa                                                                 >  2:2510511/1‑91 (MQ=255)

                           tAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTaa                                                                <  1:111497/91‑1 (MQ=255)

                            aaTTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTaaa                                                               <  1:2696867/91‑1 (MQ=255)

                              tttcattttcatTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAAcc                                                             >  1:2873834/1‑91 (MQ=255)

                                tcattttcattAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTa                                                           >  1:3441372/1‑91 (MQ=255)

                                  attttcattAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGCATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTcaa                                                         >  1:1319314/1‑91 (MQ=255)

                                        attAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACct                                                   >  1:1338640/1‑91 (MQ=255)

                                         ttAAACCATAGATTAATGTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACctc                                                  <  2:3240508/91‑1 (MQ=255)

                                          tAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACctct                                                 >  2:393034/1‑91 (MQ=255)

                                           aaaCCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTa                                                <  2:1693484/91‑1 (MQ=255)

                                           aaaCCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTa                                                >  2:1563491/1‑91 (MQ=255)

                                            aaCCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTaa                                               <  1:2662520/91‑1 (MQ=255)

                                            aaCCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTaa                                               <  1:2176078/91‑1 (MQ=255)

                                            aaCCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTaa                                               <  2:3822257/91‑1 (MQ=255)

                                             aCCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAAt                                              >  1:1380389/1‑91 (MQ=255)

                                             aCCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAAt                                              <  1:2908168/91‑1 (MQ=255)

                                             aCCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAAt                                              <  2:2741641/91‑1 (MQ=255)

                                              ccATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACcgtgaaattaatctatggtttaatgaaaatgaaattactagctatgc                                             <  2:3831519‑M2/91‑48 (MQ=255)

                                              acggaGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAAtt                                             <  1:1484261/87‑1 (MQ=255)

                                                aTAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGa                                           <  1:1974034/91‑1 (MQ=255)

                                                 tAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGAt                                          >  1:3646513/1‑91 (MQ=255)

                                                   gATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATcc                                        >  1:3145961/1‑91 (MQ=255)

                                                    aTTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAAt                                                        >  2:1046948/1‑74 (MQ=255)

                                                    aTTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAAt                                                        <  1:1046948/74‑1 (MQ=255)

                                                     ttAATTTCACGTTCAGCAGACTCTAATGAATCTGAACcgtgaaattaatctatggtttaatgaaaatgaaattactagctatgcttcacca                                      <  1:3169004‑M2/91‑55 (MQ=255)

                                                     ttAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTg                                      >  1:464583/1‑91 (MQ=255)

                                                     ttAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTg                                      >  1:963486/1‑91 (MQ=255)

                                                       aaTTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTTAACCTAAATCACCTCTAATTGATCCTGGt                                    >  2:2438254/1‑91 (MQ=255)

                                                       aaTTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGt                                    <  1:2511719/91‑1 (MQ=255)

                                                        aTTTCACGTTCAGCAGACTCTAATGAATCTGAACcgtgaaattaatctatggtttaatgaaaatgaaattactagctatgcttcaccacgt                                   <  1:2814610‑M2/91‑58 (MQ=255)

                                                        aTTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTg                                   <  1:2558309/91‑1 (MQ=255)

                                                         tttCACGTTCAGCAGACTCTAATGAATCTGAACcgtgaaattaatctatggtttaatgaaaatgaaattactagctatgcttcaccacgtg                                  <  2:2529434‑M2/91‑59 (MQ=255)

                                                          ttCACGTTCAGCAGACTCTAATGAATCTGAACcgtgaaattaatctatggtttaatgaaaatgaaattactagctatgcttcaccacgtga                                 <  1:2006221‑M2/91‑60 (MQ=255)

                                                          ttCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGaa                                 <  2:1258377/91‑1 (MQ=255)

                                                          ttCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGaa                                 <  1:2250836/91‑1 (MQ=255)

                                                             aCGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCt                              >  1:1371207/1‑91 (MQ=255)

                                                                ttCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCt                           <  1:3756699/91‑1 (MQ=255)

                                                                ttCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCt                           <  2:1857215/91‑1 (MQ=255)

                                                                ttCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCt                           <  1:3703347/91‑1 (MQ=255)

                                                                 tCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCAACTCTAATTGATCCTGGTGAAGCTTCTg                          >  2:450735/1‑91 (MQ=255)

                                                                  cagcagACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGa                         >  1:2831570/1‑91 (MQ=255)

                                                                  cagcagACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGa                         >  2:2171971/1‑91 (MQ=255)

                                                                   agcagACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGaa                        <  1:2665360/91‑1 (MQ=255)

                                                                   agcagACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGaa                        >  1:1774764/1‑91 (MQ=255)

                                                                   agcagACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGaa                        >  2:2342124/1‑91 (MQ=255)

                                                                    gcagACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAg                       <  2:40466/91‑1 (MQ=255)

                                                                    gcagACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAg                       >  2:1896642/1‑91 (MQ=255)

                                                                    gcagACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAg                       >  1:1878682/1‑91 (MQ=255)

                                                                     cagACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAgg                      <  2:1424747/91‑1 (MQ=255)

                                                                       gACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGAt                    <  2:1116159/91‑1 (MQ=255)

                                                                       gACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGAt                    <  1:3581613/91‑1 (MQ=255)

                                                                        aCTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGAtt                   >  2:3875819/1‑91 (MQ=255)

                                                                         ctctAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTg                  >  2:1314934/1‑91 (MQ=255)

                                                                         ctctAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTg                  >  1:1546043/1‑91 (MQ=255)

                                                                         ctctAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTg                  >  2:687782/1‑91 (MQ=255)

                                                                         ctctAATGAATCTGAACCGTGAATGATATTTCGACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTg                  >  2:3803755/1‑91 (MQ=255)

                                                                          tctAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTgg                 <  1:589941/91‑1 (MQ=255)

                                                                          tctAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTgg                 <  1:402487/91‑1 (MQ=255)

                                                                          tctAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTgg                 <  2:246361/91‑1 (MQ=255)

                                                                           ctAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGt                >  2:2619703/1‑91 (MQ=255)

                                                                             aaTGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGtgc              >  1:490753/1‑91 (MQ=255)

                                                                             aaTGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGtgc              <  1:3464579/91‑1 (MQ=255)

                                                                              aTGAATCTGAACCGTGAATGATATTTCTACCATCAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTGTGAAGGATTGGtgct             <  1:3309831/91‑1 (MQ=255)

                                                                              aTGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTATTTGATCCTTGTTAAGCTTCTGAAGGATTGGtgct             <  1:1714354/91‑1 (MQ=255)

                                                                              aTGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGtgct             >  2:2686237/1‑91 (MQ=255)

                                                                                   tCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCaa        <  1:1660452/91‑1 (MQ=255)

                                                                                    cTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTATAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCaat       <  2:2997195/91‑1 (MQ=255)

                                                                                     tGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCaata      >  2:352686/1‑91 (MQ=255)

                                                                                     tGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCaata      <  2:3308099/91‑1 (MQ=255)

                                                                                      gAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCaataa     >  1:2374163/1‑91 (MQ=255)

                                                                                       aaCCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCaataat    <  2:3673431/91‑1 (MQ=255)

                                                                                       aaCCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCaataat    >  1:2941088/1‑91 (MQ=255)

                                                                                        aCCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCAataata   >  1:2360864/1‑91 (MQ=255)

                                                                                        aCCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCAataata   >  2:1741111/1‑91 (MQ=255)

                                                                                        aCCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCAataata   >  1:1010753/1‑91 (MQ=255)

ATGCATCACGTGGTGAAGCATAGCTAGTAATTTCATTTTCATTAAACCATAGATTAATTTCACGTTCAGCAGACTCTAATGAATCTGAACCGTGAATGATATTTCTACCAACAGTTAAACCTAAATCACCTCTAATTGATCCTGGTGAAGCTTCTGAAGGATTGGTGCTGCCAATAATAT  >  USA300TCH1516_ALE/1539710‑1539889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.