| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1572911 = | 154 (0.810) | 14 (0.080) | 7/148 | NT | 9.7% | coding (4606/6201 nt) | USA300HOU_RS07705 | Glycyl‑glycine endopeptidase ALE‑1 |
| ? | USA300TCH1516_ALE | 1572951 = | 118 (0.670) | coding (4566/6201 nt) | USA300HOU_RS07705 | Glycyl‑glycine endopeptidase ALE‑1 | |||||
CCCCAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1573006‑1572911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCAAA > USA300TCH1516_ALE/1572951‑1573040 CCCCAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGT < 1:644572/91‑1 CCCAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTg > 2:2527657/1‑90 CCCAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTT < 1:825255/91‑1 CCAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTG > 1:1120403/1‑91 CCAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTG > 2:1168251/1‑91 CCAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTG > 2:2724615/1‑91 CAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGG > 1:2325356/1‑91 CAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGG > 1:2325907/1‑91 CAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGG > 1:2324263/1‑91 CAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGG > 1:2545344/1‑91 CAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGG > 1:799284/1‑91 CAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGG > 1:432413/1‑91 CAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGG > 1:432780/1‑91 AGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGG > 2:3683058/1‑91 AGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGG > 1:3848562/1‑91 AGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGG > 1:440656/1‑91 GGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGG > 2:1914659/1‑91 CATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCC > 1:3534131/1‑91 CAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGG > 1:1010264/1‑91 CAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGG > 1:778962/1‑91 AAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGG > 2:524253/1‑91 AAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGG > 2:359483/1‑91 AGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGG > 2:1184918/1‑91 AGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGG > 1:1408214/1‑91 AGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGG > 1:1485966/1‑91 ACGAGATGTGGTTGTTCCCCTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCACTGTGCATTACTTCTTGAACTCCACCACCTGGGGCGT > 1:2524009/1‑91 ACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGT > 1:263359/1‑91 ACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGT > 1:2403593/1‑91 ACGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCCGGGGCGT > 2:1931368/1‑91 CGAGATGTGGTTGTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTT > 1:2378039/1‑91 GTTCCACTAGGAGTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCT < 1:305950/91‑1 TTGGGGTGCATAGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACA > 2:2866287/1‑91 TGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAG > 2:761186/1‑91 GGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGC > 2:3508577/1‑91 GGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCA < 2:2579478/91‑1 GGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCAA < 2:1770272/91‑1 GGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCAA > 1:2726275/1‑91 GTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCAAA < 2:3048507/91‑1 GTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCAAA > 2:2260556/1‑91 GTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCAAA > 2:2260445/1‑91 CCCCAGGTGGTGGAGTTCAAGAAGTAATTCACAGGGCTGACGGAACATTCCATGCACCCCAAGGACGAGATGTGGTTGTTCCACTAGGAGTTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1573006‑1572911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCAAA > USA300TCH1516_ALE/1572951‑1573040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |