BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1572911 =	154 (0.810)	14 (0.080)	7/148	NT	9.7%	coding (4606/6201 nt)	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1
*	?	USA300TCH1516_ALE	1572951 =	118 (0.670)	14 (0.080)	7/148	NT	9.7%	coding (4566/6201 nt)	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1

Only 100 of 171 total aligned reads displayed.

AACACCCATACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCAAA  >  USA300TCH1516_ALE/1572861‑1573040

aaCACCCATACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGt                                                                                           <  1:3696756/91‑1 (MQ=255)

 acacCCATACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTg                                                                                          >  1:3796763/1‑91 (MQ=255)

 acacCCATACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTg                                                                                          >  1:3796782/1‑91 (MQ=255)

   acCCATACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCa                                                                                        >  1:2724615/1‑91 (MQ=255)

   acCCATACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCa                                                                                        >  1:897801/1‑91 (MQ=255)

     ggagttcaagaagtaattcacagggctgacggaacattccatgcaCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATg                                                                                      >  1:3534131‑M1/46‑91 (MQ=255)

      cATACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATgg                                                                                     >  2:2941412/1‑91 (MQ=255)

      cATACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATgg                                                                                     <  1:2214467/91‑1 (MQ=255)

       aTACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGa                                                                                    <  2:559859/91‑1 (MQ=255)

        tACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGaa                                                                                   <  2:1993763/91‑1 (MQ=255)

        tACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGaa                                                                                   >  2:698861/1‑91 (MQ=255)

          cGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATg                                                                                 <  2:3176174/91‑1 (MQ=255)

          cGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATg                                                                                 >  2:589092/1‑91 (MQ=255)

            cTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGtt                                                                               <  2:3124988/91‑1 (MQ=255)

              gTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTcc                                                                             >  2:383378/1‑91 (MQ=255)

              gTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTcc                                                                             >  1:3553358/1‑91 (MQ=255)

                aaCTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGt                                                                           <  1:2152862/91‑1 (MQ=255)

                aaCTTCAGACTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGt                                                                           <  1:3482052/91‑1 (MQ=255)

                 aCTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTc                                                                          <  2:2418837/91‑1 (MQ=255)

                   ttCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAg                                                                        >  2:1022239/1‑91 (MQ=255)

                    tCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGc                                                                       >  1:4673/1‑91 (MQ=255)

                    tCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCCAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGc                                                                       >  2:3190272/1‑91 (MQ=255)

                      agagTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGccc                                                                     >  2:1296155/1‑91 (MQ=255)

                      agagTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGGCAGccc                                                                     >  2:1610445/1‑91 (MQ=255)

                       gagTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCt                                                                    <  1:3505568/91‑1 (MQ=255)

                          tgtCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCtgtg                                                                 >  2:988562/1‑91 (MQ=255)

                          tgtCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCtgtg                                                                 <  1:2892452/91‑1 (MQ=255)

                          tgtCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCtgtg                                                                 <  1:2163135/91‑1 (MQ=255)

                            tCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCCTGGAATGTTCCGTCAGCCCTGTGaa                                                               >  1:1769203/1‑91 (MQ=255)

                            tCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGaa                                                               >  1:3822022/1‑91 (MQ=255)

                            tCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGaa                                                               >  1:2239356/1‑91 (MQ=255)

                             cATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAAt                                                              <  1:566484/91‑1 (MQ=255)

                             cATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAAt                                                              >  1:3048507/1‑91 (MQ=255)

                             cATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAAt                                                              >  2:765776/1‑91 (MQ=255)

                             cATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAAt                                                              <  2:1054732/91‑1 (MQ=255)

                             cATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAAt                                                              <  1:1892809/91‑1 (MQ=255)

                              aTTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCCTGGGGTGCATGGAATGTTCCGTCAGCCCTGCGAAtc                                                             >  2:1178800/1‑90 (MQ=255)

                               ttAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTa                                                            >  2:1190024/1‑91 (MQ=255)

                               ttAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTa                                                            <  1:3385974/91‑1 (MQ=255)

                                tAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTAc                                                           <  2:2272783/91‑1 (MQ=255)

                                tAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTAc                                                           <  1:112378/91‑1 (MQ=255)

                                 aGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCGCTGTGAATTAct                                                          <  1:2979569/91‑1 (MQ=255)

                                 aGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTAct                                                          >  2:2495912/1‑91 (MQ=255)

                                  gCATTTATTACGCTATCCCCAGCTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTActt                                                         <  2:3494875/91‑1 (MQ=255)

                                    aTTTATTACGCGATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTActtct                                                       <  1:3512897/91‑1 (MQ=255)

                                     tttATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTActtctt                                                      <  1:3316310/91‑1 (MQ=255)

                                     tttATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTActtctt                                                      <  2:3758677/91‑1 (MQ=255)

                                       tattaCGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTATGAATTACTTCTTGa                                                    >  1:3009981/1‑91 (MQ=255)

                                        attaCGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGaa                                                   <  2:46596/91‑1 (MQ=255)

                                        attaCGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGaa                                                   >  2:1043559/1‑91 (MQ=255)

                                        attaCGCGACCCCCAACTCCTAGGGGAACAACCCGGTCTCGTCCTCGGGGTGCATGAAACGTTCCGGCAGCCCTGTGAATTACTTCTTGaa                                                   <  2:46676/91‑1 (MQ=255)

                                          taCGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACt                                                 <  2:150072/91‑1 (MQ=255)

                                          taCGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACt                                                 >  1:1541688/1‑91 (MQ=255)

                                           aCGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTc                                                >  1:3092214/1‑91 (MQ=255)

                                           aCGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTc                                                >  1:3834565/1‑91 (MQ=255)

                                            cGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTcc                                               >  1:1535401/1‑91 (MQ=255)

                                             gCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTcca                                              <  2:478755/91‑1 (MQ=255)

                                             gCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTcca                                              <  2:2391127/91‑1 (MQ=255)

                                                  CCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCaccacc                                         >  2:1914659‑M1/1‑91 (MQ=255)

                                                   CCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCt                                        >  1:3848562‑M1/1‑91 (MQ=255)

                                                    CCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTg                                       >  1:799284‑M1/1‑91 (MQ=255)

                                                    CCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTg                                       >  1:2325356‑M1/1‑91 (MQ=255)

                                                    CCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTg                                       >  1:432780‑M1/1‑91 (MQ=255)

                                                     caaggacgagatgtggttgttccactaggagttggggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTgg                                      >  1:1010264‑M2/38‑91 (MQ=255)

                                                     CAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTgg                                      >  2:1168251‑M1/1‑91 (MQ=255)

                                                     CAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTgg                                      >  2:2724615‑M1/1‑91 (MQ=255)

                                                     CAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTgg                                      >  1:1120403‑M1/1‑91 (MQ=255)

                                                      cACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTggg                                     >  2:2527657‑M1/2‑91 (MQ=255)

                                                      aaggacgagatgtggttgttccactaggagttggggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTggg                                     >  2:359483‑M2/37‑91 (MQ=255)

                                                       aggacgagatgtggttgttccactaggagttggggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTgggg                                    >  1:1408214‑M2/36‑91 (MQ=255)

                                                       aggacgagatgtggttgttccactaggagttggggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTgggg                                    >  1:1485966‑M2/36‑91 (MQ=255)

                                                       ACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTgggg                                    <  1:644572‑M1/91‑1 (MQ=255)

                                                          ccTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGt                                 <  1:1577300/91‑1 (MQ=255)

                                                          ccTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGt                                 <  1:1022239/91‑1 (MQ=255)

                                                          acgagatgtggttgttcccctaggagttggggTGCATGGAATGTTCCGTCAGCACTGTGCATTACTTCTTGAACTCCACCACCTGGGGCGt                                 >  1:2524009‑M2/33‑91 (MQ=255)

                                                          acgagatgtggttgttccactaggagttggggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGt                                 >  1:2403593‑M2/33‑91 (MQ=255)

                                                          acgagatgtggttgttccactaggagttggggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGt                                 >  1:263359‑M2/33‑91 (MQ=255)

                                                          acgagatgtggttgttccactaggagttggggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCCGGGGCGt                                 >  2:1931368‑M2/33‑91 (MQ=255)

                                                           cgagatgtggttgttccactaggagttggggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGtt                                >  1:2378039‑M2/32‑91 (MQ=255)

                                                            tAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGttt                               <  2:538786/91‑1 (MQ=255)

                                                            tAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGttt                               <  2:2122702/91‑1 (MQ=255)

                                                              gTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCATCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTcc                             <  2:1124090/91‑1 (MQ=255)

                                                                ggAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAg                           >  2:3033878/1‑91 (MQ=255)

                                                                ggAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAg                           <  1:2129042/91‑1 (MQ=255)

                                                                  aacaacCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAAcg                                                 <  1:1149099/67‑2 (MQ=255)

                                                                    caacCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAAcc                       <  2:745712/91‑1 (MQ=255)

                                                                       ccACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACctct                    <  2:1005907/91‑1 (MQ=255)

                                                                         acaTCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTAt                  <  1:344681/91‑1 (MQ=255)

                                                                          caTCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATc                 >  2:15068/1‑91 (MQ=255)

                                                                          caTCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATc                 <  1:913981/91‑1 (MQ=255)

                                                                          caTCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATc                 >  2:2232384/1‑91 (MQ=255)

                                                                           aTCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCa                <  1:1754226/91‑1 (MQ=255)

                                                                            tctcGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCAt               >  1:2038538/1‑91 (MQ=255)

                                                                            tctcGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCAt               >  2:596499/1‑91 (MQ=255)

                                                                              tcGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCAttt             >  1:3230876/1‑91 (MQ=255)

                                                                                gTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTaa           >  2:387247/1‑91 (MQ=255)

                                                                                    ttggggTGCATAGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACa       >  2:2866287‑M2/7‑91 (MQ=255)

                                                                                       gggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCa    <  2:2579478‑M2/88‑1 (MQ=255)

                                                                                        ggTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCaa   >  1:2726275‑M2/3‑91 (MQ=255)

                                                                                         gTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCaaa  >  2:2260556‑M2/2‑91 (MQ=255)

AACACCCATACGCTGTAACTTCAGAGTGTCATTAGCATTTATTACGCTATCCCCAACTCCTAGTGGAACAACCACATCTCGTCCTTGGGGTGCATGGAATGTTCCGTCAGCCCTGTGAATTACTTCTTGAACTCCACCACCTGGGGCGTTTCCAGAACCTCTATCATTTAATACAGCAAA  >  USA300TCH1516_ALE/1572861‑1573040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.