| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1574495 = | 207 (1.090) | 20 (0.110) | 9/150 | NT | 9.8% | coding (3022/6201 nt) | USA300HOU_RS07705 | Glycyl‑glycine endopeptidase ALE‑1 |
| ? | USA300TCH1516_ALE | 1574518 = | 176 (0.990) | coding (2999/6201 nt) | USA300HOU_RS07705 | Glycyl‑glycine endopeptidase ALE‑1 | |||||
TATTGATAAGTATAGTGCATTCGATGAACAAGAAAAGCAAAACATTTTAACTCGAACTAAAGAAAAAAATGACTTGCGAATTAAAAAAGAGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1574589‑1574495‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCG > USA300TCH1516_ALE/1574518‑1574607 TATTGATAAGGATAGTGCATTCGATGAACAAGAAAAGCAAAACATTTTAACTCGAACTAAAGAAAAAAATGACTTGCGAATTAAAAAAGAG > 2:2061006/1‑91 TTGATAAGTATAGTGCATTCGATGAACAAGAAAAGCAAAACATTTTAACTCGAACTAAAGAAAAAAATGACTTGCGAATTAAAAAAGAGCA > 2:2891990/1‑91 TTGATAAGTATAGTGCATTCGATGAACAAGAAAAGCAAAACATTTTAACTCGAACTAAAGAAAAAAATGACTTGCGAATTAAAAAAGAGCA > 2:2415788/1‑91 TTGATAAGTATAGTGCATTCGATGAACAAGAAAAGCAAAACATTTTAACTCGAACTAAAGAAAAAAATGACTTGCGAATTAAAAAAGAGCA < 1:3024602/91‑1 GATAAGTATAGTGCATTCGATGAACAAGAAAAGCAAAACATTTTAACTCGAACTAAAGAAAAAAATGACTTGCGAATTAAAAAAGAGCAAG > 2:715850/1‑91 AAAACATTTTAACTCGAACTAAAGAAAAAAATGACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTT > 1:724409/1‑91 AAAACATTTTAACTCGAACTAAAGAAAAAAATGACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTT > 1:483164/1‑91 AATGACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATAC > 1:1578911/1‑91 AATGACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATAC > 2:1767265/1‑91 AATGACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATAC > 1:814217/1‑91 AATGACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATAC > 1:662914/1‑91 AATGACTTGCGAATTAAAAAAGAGCAAGTCATTATTTTCTTTAGTTCGAGTTAAAATGATTTGCTTTTCTTGTTCATCGAATGCACTATAC > 2:1767338/1‑91 TGACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTT > 2:1194020/1‑91 GACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTA > 1:1772219/1‑91 GACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTA > 2:3756898/1‑91 GACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTA > 1:1607427/1‑91 ACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTAT > 1:3130616/1‑91 ACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTAT > 1:747079/1‑91 ACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTAT > 2:2138974/1‑91 ACTTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTAT > 2:2138937/1‑91 TTGCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCA > 2:2825929/1‑91 GCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAAT > 1:846734/1‑91 GCGAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAAT > 1:1886905/1‑91 GAATTAAAAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAA > 1:1453096/1‑91 AAAAGAGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTG > 2:44722/1‑91 tttCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTT > 2:2486907/4‑91 GCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTT > 1:2515516/1‑91 CAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTT > 1:98678/1‑91 CAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTT < 1:2920360/91‑1 CAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTCGACTTCTT > 2:3576793/1‑91 AAGTCATTTTTTTTTTTATTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTT > 2:1838855/1‑91 AAGTCATTTTTTTCTTTAGTTCTAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTT > 2:2098757/1‑91 AAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTT > 2:1838421/1‑91 AAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTT < 1:2231408/91‑1 AGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTC < 1:3712239/91‑1 AGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTC > 2:639125/1‑91 GTCATTTTTTTTTTTTTTTTTAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTTTTGAGTTTTTTCG > 2:1586774/1‑91 GTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCG > 2:1309627/1‑91 GTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCG > 1:514330/1‑91 GTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCG < 1:3662597/91‑1 TATTGATAAGTATAGTGCATTCGATGAACAAGAAAAGCAAAACATTTTAACTCGAACTAAAGAAAAAAATGACTTGCGAATTAAAAAAGAGCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1574589‑1574495‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCG > USA300TCH1516_ALE/1574518‑1574607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |