BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1574495 =	207 (1.090)	20 (0.110)	9/150	NT	9.8%	coding (3022/6201 nt)	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1
*	?	USA300TCH1516_ALE	1574518 =	176 (0.990)	20 (0.110)	9/150	NT	9.8%	coding (2999/6201 nt)	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1

Only 100 of 259 total aligned reads displayed.

CAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATC  >  USA300TCH1516_ALE/1574405‑1574585

cgaaaaaactcaagaacttattgataagtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgac                                                                                            >  2:1309627‑M1/91‑91 (MQ=255)

cgaaaaaactcaaaaacttattgataagtatagtgcattcgatgaacaagaaaagcaaaacattttaactaaaaaaaaaaaaaaaaatgac                                                                                            >  2:1586774‑M1/91‑91 (MQ=255)

cAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTc                                                                                            >  1:191834/1‑91 (MQ=255)

 aaGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCt                                                                                           <  2:2411975/91‑1 (MQ=255)

  aaaaaactcaagaacttattgataagtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaaataaaaaaaaaaatgaCtt                                                                                          >  2:1838855‑M1/89‑91 (MQ=255)

   gCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTg                                                                                         <  1:796495/91‑1 (MQ=255)

       ttCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGctct                                                                                     >  1:3468653/1‑91 (MQ=255)

       ttCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTAGATTTTCTGATTGAGTTCTTGctct                                                                                     >  1:3618079/1‑91 (MQ=255)

        tCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCtt                                                                                    >  1:1847467/1‑91 (MQ=255)

         cAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCttt                                                                                   >  2:1030531/1‑91 (MQ=255)

         cAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCttt                                                                                   >  1:867029/1‑91 (MQ=255)

         cAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCttt                                                                                   >  1:1401124/1‑91 (MQ=255)

          aaTTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCtttt                                                                                  <  2:3072125/91‑1 (MQ=255)

          aaTTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCtttt                                                                                  <  1:844398/91‑1 (MQ=255)

           aTTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCttttt                                                                                 <  2:1063572/91‑1 (MQ=255)

            tttcttttctTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCtttttt                                                                                <  1:2301371/91‑1 (MQ=255)

            tttcttttctTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCtttttt                                                                                <  1:127948/91‑1 (MQ=255)

            tttcttttctTTCATTTTCTGAAATCTGACCATAACTCAAAGCTTTATCTTTCAATTCTATGATTTTCTGATTGAGTTCTTGCTCtttttt                                                                                >  1:3101604/1‑91 (MQ=255)

               cttttctttCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAAt                                                                             <  2:148874/91‑1 (MQ=255)

                ttttctttCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAAtt                                                                            >  1:2716878/1‑91 (MQ=255)

                 ttattgataagtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgaCTTGCTCTTTTTTAATTc                                                                           >  1:1453096‑M1/74‑91 (MQ=255)

                   attgataagtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgaCTTGCTCTTTTTTAATTCGc                                                                         >  1:1886905‑M1/72‑91 (MQ=255)

                     tttcATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCaa                                                                       >  1:1641194/1‑91 (MQ=255)

                      ttcATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAg                                                                      <  1:2659460/91‑1 (MQ=255)

                       tcATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGt                                                                     <  2:678147/91‑1 (MQ=255)

                       ataagtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgaCTTGCTCTTTTTTAATTCGCAAGt                                                                     >  1:747079‑M1/68‑91 (MQ=255)

                       ataagtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgaCTTGCTCTTTTTTAATTCGCAAGt                                                                     >  2:2138937‑M1/68‑91 (MQ=255)

                        cATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTc                                                                    <  1:2069879/91‑1 (MQ=255)

                        cATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTc                                                                    <  2:2384797/91‑1 (MQ=255)

                        cATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTc                                                                    <  1:3665539/91‑1 (MQ=255)

                          ttttCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAt                                                                  <  2:2907738/91‑1 (MQ=255)

                          ttttCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAt                                                                  <  2:3465478/91‑1 (MQ=255)

                           gtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgaCTTGCTCTTTTTTAATTCGCAAGTCAtt                                                                 >  2:1767265‑M1/64‑91 (MQ=255)

                           gtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgaCTTGCTCTTTTTTAATTCGCAAGTCAtt                                                                 >  1:1578911‑M1/64‑91 (MQ=255)

                           gtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgaCTTGCTCTTTTTTAATTCGCAAGTCAtt                                                                 >  1:662914‑M1/64‑91 (MQ=255)

                             tCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAtttt                                                               <  1:2851112/91‑1 (MQ=255)

                             tCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAtttt                                                               <  1:3743978/91‑1 (MQ=255)

                              cTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttttt                                                              >  2:2305563/1‑91 (MQ=255)

                              cTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttttt                                                              >  1:390362/1‑91 (MQ=255)

                               tGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttcttt                                                             >  1:3006570/1‑91 (MQ=255)

                                gAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttttttt                                                            <  2:348454/91‑1 (MQ=255)

                                gAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttttttt                                                            <  2:765140/91‑1 (MQ=255)

                                gAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttttttt                                                            <  1:3536383/91‑1 (MQ=255)

                                gAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttttttt                                                            <  2:467131/91‑1 (MQ=255)

                                gAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTCGCTCTTTTTTAATTCGCAAGTCAttttttt                                                            >  2:2936556/1‑91 (MQ=255)

                                 aaaTCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTc                                                           >  2:229225/1‑91 (MQ=255)

                                  aaTCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCt                                                          <  1:1763019/91‑1 (MQ=255)

                                   aTCTGACCATCACTCAAAGCTTTTTCTTTCATTTCTTTGCTTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCtt                                                         <  1:1611898/91‑1 (MQ=255)

                                    tCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCttt                                                        <  2:1950849/91‑1 (MQ=255)

                                      tGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAg                                                      <  2:1198336/91‑1 (MQ=255)

                                         ccATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTc                                                   >  2:1322782/1‑91 (MQ=255)

                                         ccATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTc                                                   <  2:867029/91‑1 (MQ=255)

                                          cATCACTCAAAGCTTTTTTTTTTAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTTGTTCg                                                  >  2:715286/1‑91 (MQ=255)

                                          cATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGt                                                                     >  2:3699929/1‑72 (MQ=255)

                                          cATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCg                                                  >  1:575949/1‑91 (MQ=255)

                                             cACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGt                                               >  2:1130410/1‑91 (MQ=255)

                                             cACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGt                                               <  1:1030793/91‑1 (MQ=255)

                                             cACTCAAAGCTATTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGt                                               <  1:3517095/91‑1 (MQ=255)

                                              aCTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGtt                                              <  1:1659963/91‑1 (MQ=255)

                                              aCTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGtt                                              >  1:3243074/1‑91 (MQ=255)

                                               cTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTa                                             <  1:933902/91‑1 (MQ=255)

                                               cTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTa                                             <  1:2841217/91‑1 (MQ=255)

                                               cTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTa                                             <  1:2841374/91‑1 (MQ=255)

                                                tCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTaa                                            <  1:1561238/91‑1 (MQ=255)

                                                tCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTaa                                            >  1:1963186/1‑91 (MQ=255)

                                                tCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTaa                                            <  2:2745299/91‑1 (MQ=255)

                                                 cAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTaaa                                           <  2:3271224/91‑1 (MQ=255)

                                                   aaGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAAt                                         >  1:542129/1‑91 (MQ=255)

                                                    aGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATg                                        >  2:3234588/1‑91 (MQ=255)

                                                     gCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGt                                       >  1:2925300/1‑91 (MQ=255)

                                                      cTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGtt                                      <  1:3039889/91‑1 (MQ=255)

                                                       tttttCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGttt                                     >  2:1668265/1‑91 (MQ=255)

                                                        ttttCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGtttt                                    >  1:970806/1‑91 (MQ=255)

                                                        ttttCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGtttt                                    >  1:1742288/1‑91 (MQ=255)

                                                        ttttCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGtttt                                    >  2:3379764/1‑91 (MQ=255)

                                                          ttctttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGc                                  <  1:1416355/91‑1 (MQ=255)

                                                          ttctttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGc                                  >  2:2225938/1‑91 (MQ=255)

                                                           tctttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAACTGTTTTGCt                                 >  1:3711574/1‑91 (MQ=255)

                                                           tctttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCt                                 <  2:97427/91‑1 (MQ=255)

                                                           tctttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTATGCt                                 >  1:3235055/1‑91 (MQ=255)

                                                             tttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCttt                               <  1:2146627/91‑1 (MQ=255)

                                                                taaTTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCt                            >  2:3091870/2‑91 (MQ=255)

                                                                 aaTTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCtt                           <  2:2664604/91‑1 (MQ=255)

                                                                   ttCTTTGATTTTCTGATTGAGTTCCTGCTCTTTTTTAATTCGCAAGTTATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGt                         <  2:3614718/91‑1 (MQ=255)

                                                                    tCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGtt                        <  2:17761/91‑1 (MQ=255)

                                                                     cTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTc                       >  2:3879919/1‑91 (MQ=255)

                                                                        tGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATc                    <  1:2604661/91‑1 (MQ=255)

                                                                           ttttCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGaa                 <  1:1359045/91‑1 (MQ=255)

                                                                               cTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCa             >  1:2062276/1‑91 (MQ=255)

                                                                               cTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCa             >  1:1101103/1‑91 (MQ=255)

                                                                               cTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCa             >  2:623708/1‑91 (MQ=255)

                                                                                tGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCAc            <  2:2042054/91‑1 (MQ=255)

                                                                                tGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCAc            <  2:2550346/91‑1 (MQ=255)

                                                                                   ttGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACtat         <  2:3647850/91‑1 (MQ=255)

                                                                                   ttGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACtat         >  2:1918366/1‑91 (MQ=255)

                                                                                   ttGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACtat         >  1:101040/1‑91 (MQ=255)

                                                                                      aGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATc                    <  1:503555/77‑1 (MQ=255)

                                                                                      aGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACt      <  1:1190299/91‑1 (MQ=255)

                                                                                         tCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTAt   >  1:2466700/1‑91 (MQ=255)

                                                                                         tCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTAt   >  1:2002437/1‑91 (MQ=255)

CAAGCTTTTCAATTTCTTTTCTTTCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATC  >  USA300TCH1516_ALE/1574405‑1574585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.