BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1574495 =	207 (1.090)	20 (0.110)	9/150	NT	9.8%	coding (3022/6201 nt)	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1
*	?	USA300TCH1516_ALE	1574518 =	176 (0.990)	20 (0.110)	9/150	NT	9.8%	coding (2999/6201 nt)	USA300HOU_RS07705	Glycyl‑glycine endopeptidase ALE‑1

Only 100 of 266 total aligned reads displayed.

TCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGA  >  USA300TCH1516_ALE/1574428‑1574608

tcATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGt                                                                                            <  2:678147/91‑1 (MQ=255)

ataagtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgaCTTGCTCTTTTTTAATTCGCAAGt                                                                                            >  2:2138974‑M1/68‑91 (MQ=255)

 taagtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgaCTTGCTCTTTTTTAATTCGCAAGTc                                                                                           >  1:1607427‑M1/67‑91 (MQ=255)

 taagtatagtgcattcgatgaacaagaaaagcaaaacattttaactcgaactaaagaaaaaaatgaCTTGCTCTTTTTTAATTCGCAAGTc                                                                                           >  1:1772219‑M1/67‑91 (MQ=255)

 cATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTc                                                                                           <  1:2069476/91‑1 (MQ=255)

   ttttCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAt                                                                                         <  2:3465478/91‑1 (MQ=255)

      tCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAtttt                                                                                      <  1:2851112/91‑1 (MQ=255)

       cTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttttt                                                                                     >  1:390362/1‑91 (MQ=255)

       cTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttttt                                                                                     >  2:2920360/1‑91 (MQ=255)

        tGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttcttt                                                                                    >  1:3006570/1‑91 (MQ=255)

         gAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCAttttttt                                                                                   <  2:467131/91‑1 (MQ=255)

          aaaTCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTc                                                                                  >  2:229273/1‑91 (MQ=255)

          aaaTCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTc                                                                                  <  1:3046864/91‑1 (MQ=255)

           aaTCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCt                                                                                 >  2:1925118/1‑91 (MQ=255)

           aaTCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCt                                                                                 <  1:1763019/91‑1 (MQ=255)

              cTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTa                                                                              <  2:3193621/91‑1 (MQ=255)

               tGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAg                                                                             <  2:1198336/91‑1 (MQ=255)

                gACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCtttttt                                                                            >  2:1850040/1‑88 (MQ=255)

                  ccATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTc                                                                          >  2:1322782/1‑91 (MQ=255)

                  ccATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTc                                                                          <  2:867029/91‑1 (MQ=255)

                   cATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCg                                                                         >  1:575949/1‑91 (MQ=255)

                     tCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAg                                                                       >  2:2369610/1‑91 (MQ=255)

                     tCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAg                                                                       >  1:3683865/1‑91 (MQ=255)

                      cACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGt                                                                      >  2:1130410/1‑91 (MQ=255)

                      cACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGt                                                                      <  1:1030793/91‑1 (MQ=255)

                      cACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGt                                                                      <  1:1573920/91‑1 (MQ=255)

                      cACTCAAAGCTGTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGt                                                                      <  1:3517101/91‑1 (MQ=255)

                       aCTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGtt                                                                     <  1:1659904/91‑1 (MQ=255)

                       aCTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGtt                                                                     >  1:3243074/1‑91 (MQ=255)

                        cTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTa                                                                    <  1:2841374/91‑1 (MQ=255)

                         tCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTaa                                                                   <  2:1707427/91‑1 (MQ=255)

                         tCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTaa                                                                   <  1:1510477/91‑1 (MQ=255)

                          cAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTaaa                                                                  >  1:846299/1‑91 (MQ=255)

                              gCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGt                                                              >  1:2925300/1‑91 (MQ=255)

                               cTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGtt                                                             <  1:1611931/91‑1 (MQ=255)

                               cTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGtt                                                             <  1:3038695/91‑1 (MQ=255)

                               cTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGtt                                                             <  2:3280605/91‑1 (MQ=255)

                                tttttCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGttt                                                            <  2:2231582/91‑1 (MQ=255)

                                tttttCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGttt                                                            >  2:3090834/1‑91 (MQ=255)

                                 aaaacattttaactcgaactaaagaaaaaaatgacttgcgaattaaaaaagagcaagTCATTTTTTTCTTTAGTTCGAGTTAAAATGtttt                                                           >  1:724409‑M2/58‑91 (MQ=255)

                                   ttctttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGc                                                         <  1:1723808/91‑1 (MQ=255)

                                   ttctttcAATTCTTTGATTTTCTGATTGAGTTCTGGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGc                                                         <  1:3357658/91‑1 (MQ=255)

                                    tctttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAACTGTTTTGCt                                                        >  1:3711574/1‑91 (MQ=255)

                                    tctttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCt                                                        >  1:2069951/1‑91 (MQ=255)

                                    tctttcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTATGCt                                                        >  1:3235055/1‑91 (MQ=255)

                                        tcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTc                                                    >  1:3552190/1‑91 (MQ=255)

                                        tcAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTc                                                    <  2:2395307/91‑1 (MQ=255)

                                          aaTTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCtt                                                  <  2:2664604/91‑1 (MQ=255)

                                          aaTTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCtt                                                  <  1:2824463/91‑1 (MQ=255)

                                             tCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGtt                                               <  2:17761/91‑1 (MQ=255)

                                              cTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTc                                              >  2:966235/1‑91 (MQ=255)

                                                 tGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATc                                           >  1:555313/1‑91 (MQ=255)

                                                 tGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATc                                           <  1:2604661/91‑1 (MQ=255)

                                                   aTTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGa                                         >  2:3825084/1‑91 (MQ=255)

                                                   aTTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGa                                         >  1:901440/1‑91 (MQ=255)

                                                    ttttCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGaa                                        <  1:1359045/91‑1 (MQ=255)

                                                    ttttCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTCTTCATCGaa                                        >  1:3489942/1‑91 (MQ=255)

                                                    ttttCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCA‑TTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAAt                                       >  1:192383/1‑91 (MQ=255)

                                                        cTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCa                                    >  1:1101103/1‑91 (MQ=255)

                                                        cTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCa                                    >  2:3264252/1‑91 (MQ=255)

                                                        cTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCa                                    >  1:946949/1‑91 (MQ=255)

                                                         tGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCAc                                   <  2:2550732/91‑1 (MQ=255)

                                                         tGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCAc                                   <  2:2042054/91‑1 (MQ=255)

                                                         tGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCAc                                   <  2:252544/91‑1 (MQ=255)

                                                         tGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCGTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCAc                                   >  1:2005713/1‑91 (MQ=255)

                                                           aTTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACta                                 >  1:1849308/1‑91 (MQ=255)

                                                            ttGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACtat                                >  1:101040/1‑91 (MQ=255)

                                                            ttGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACtat                                <  1:1372030/91‑1 (MQ=255)

                                                             tGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACtata                               <  2:3618079/91‑1 (MQ=255)

                                                              aatgacttgcgaattaaaaaagagcaagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATAc                              >  2:1767265‑M2/29‑91 (MQ=255)

                                                              aatgacttgcgaattaaaaaagagcaagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATAc                              >  1:662914‑M2/29‑91 (MQ=255)

                                                              aatgacttgcgaattaaaaaagagcaagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATAc                              >  1:1578911‑M2/29‑91 (MQ=255)

                                                               aGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATc                                           <  1:503555/77‑1 (MQ=255)

                                                               aGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACt                             <  1:1190299/91‑1 (MQ=255)

                                                                 gacttgcgaattaaaaaagagcaagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTa                           >  2:3756898‑M2/26‑91 (MQ=255)

                                                                  acttgcgaattaaaaaagagcaagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTAt                          >  1:747079‑M2/25‑91 (MQ=255)

                                                                   CTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATc                         >  2:715850‑M1/1‑91 (MQ=255)

                                                                    ttgcgaattaaaaaagagcaagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCa                        >  2:2825929‑M2/23‑91 (MQ=255)

                                                                          ttttttAATCCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGt                  >  1:1954474/1‑91 (MQ=255)

                                                                             tttAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCt               <  1:3752003/91‑1 (MQ=255)

                                                                             tttAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCt               >  1:447110/1‑91 (MQ=255)

                                                                             tttAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCt               >  1:3164344/1‑91 (MQ=255)

                                                                               tAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTg             <  1:2388253/91‑1 (MQ=255)

                                                                               tAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTg             <  1:2387468/91‑1 (MQ=255)

                                                                               tAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTg             <  2:3683865/91‑1 (MQ=255)

                                                                               tAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGCTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTg             <  2:3409939/91‑1 (MQ=255)

                                                                                aaTTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGa            >  2:2815399/1‑91 (MQ=255)

                                                                                 aTTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAg           >  2:2191930/1‑91 (MQ=255)

                                                                                 aTTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAg           <  2:155243/91‑1 (MQ=255)

                                                                                  ttCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGt          <  1:2743126/91‑1 (MQ=255)

                                                                                   tCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGtt         <  2:766625/91‑1 (MQ=255)

                                                                                   tCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGtt         >  2:2537525/1‑91 (MQ=255)

                                                                                      caagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGttttt      >  1:98678‑M2/5‑91 (MQ=255)

                                                                                      caagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTCGActtctt      >  2:3576793‑M2/5‑91 (MQ=255)

                                                                                       aagTCATTTTTTTCTTTAGTTCTAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGtttttt     >  2:2098757‑M2/4‑91 (MQ=255)

                                                                                       aagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGtttttt     <  1:2231408‑M2/88‑1 (MQ=255)

                                                                                       aagTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGtttttt     >  2:1838421‑M2/4‑91 (MQ=255)

                                                                                        agTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTc    >  2:639125‑M2/3‑91 (MQ=255)

                                                                                         gTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCg   >  2:1309627‑M2/2‑91 (MQ=255)

                                                                                          tCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGa  <  1:1428097/91‑1 (MQ=255)

TCATTTTCTGAAATCTGACCATCACTCAAAGCTTTTTCTTTCAATTCTTTGATTTTCTGATTGAGTTCTTGCTCTTTTTTAATTCGCAAGTCATTTTTTTCTTTAGTTCGAGTTAAAATGTTTTGCTTTTCTTGTTCATCGAATGCACTATACTTATCAATAAGTTCTTGAGTTTTTTCGA  >  USA300TCH1516_ALE/1574428‑1574608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.