| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1586059 | 238 (1.250) | 16 (0.090) | 5/148 | NT | 6.6% | intergenic (‑52/+75) | USA300HOU_RS07770/USA300TCH1516_01451 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1586098 | 235 (1.330) | intergenic (‑91/+36) | USA300HOU_RS07770/USA300TCH1516_01451 | hypothetical protein/hypothetical protein | |||||
TAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1585964‑1586059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccccTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCTTT < USA300TCH1516_ALE/1586098‑1586010 TAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGG < 2:3639919/91‑1TAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGG < 1:420428/91‑1TAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGG < 1:343988/91‑1TAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGG < 2:3709256/91‑1TAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGG > 2:659690/1‑91 AATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGC > 1:1592967/1‑91 AATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGC < 2:1876560/91‑1 CCTCTATATATTCTTTCAGCTGTTTTTTTTTTAATTTCATATAAAGACCCCCTTTCTTAAAAGTTTATCCGCTTTGCAAGCGACGGGCCCC > 2:3529881/1‑91 CCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCC < 2:249426/91‑1 CCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCC < 1:3791422/91‑1 CCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCC < 1:1837842/91‑1 ATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCG < 1:391085/91‑1 ATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGC < 2:3657400/91‑1 ATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGC < 2:3657414/91‑1 TAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCG < 1:2481090/91‑1 AAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGG < 1:2505394/91‑1 AAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGG < 1:962041/91‑1 AAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGG < 1:611111/91‑1 tatCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATCGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGG < 1:2545611/88‑1 tatCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATCGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGG < 1:1397435/88‑1 tatCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATCGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGG < 1:3528095/88‑1 AGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGG < 1:117733/91‑1 AGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGG < 1:3840554/91‑1 AGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGG < 1:3840124/91‑1 atCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATCGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGG < 1:2755941/89‑1 atCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATCGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGG < 1:621879/89‑1 tCCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCCTGCCCATCGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGC < 2:2004288/90‑1 ttaCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGG < 1:2304267/88‑1 ttaCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGG < 1:2304672/88‑1 GGCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGTCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGG < 2:3183268/91‑1 GCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGT > 1:846221/1‑91 GCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGT < 2:1628351/91‑1 GCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGT > 2:3786098/1‑91 GCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGT > 1:588864/1‑91 GCCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGT > 2:2685189/1‑91 CCCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTC < 2:2149994/91‑1 CCCCTGCCCATTGGCTTAAAATGTTTTTTCTCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCT < 1:1023166/91‑1 CCCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCT > 1:1961327/1‑91 CCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCTT < 1:347143/91‑1 CCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCTT < 1:2775641/91‑1 CCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCTT < 2:3521557/91‑1 CCCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCTT < 1:3730068/91‑1 CCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCTTT < 2:2299021/91‑1 CCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCTTT < 2:2196226/91‑1 CCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCTTT < 2:1926606/91‑1 CCTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCTTT < 2:889806/91‑1 TAATCCTCTATATATTCTTTCAGCTGTTTTTTTGTTAATTTCATATAAAGACCCCCTTTCATAAAAGTTTATCCGCGTTGCAAGCGAAGGGCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1585964‑1586059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccccTGCCCATTGGCTTAAAATGTTTTTTCGCCGGGTACCGGCGGGGGCCCTTCGCTTGCAACGCGGATAAACTTTTATGAAAGGGGGTCTTT < USA300TCH1516_ALE/1586098‑1586010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |