| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1614319 = | 184 (0.970) | 17 (0.100) | 9/150 | NT | 8.3% | intergenic (+14/+64) | USA300HOU_RS08000/xerD_3 | hypothetical protein/Tyrosine recombinase XerD |
| ? | USA300TCH1516_ALE | 1614368 = | 202 (1.130) | intergenic (+63/+15) | USA300HOU_RS08000/xerD_3 | hypothetical protein/Tyrosine recombinase XerD | |||||
AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1614413‑1614319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGT > USA300TCH1516_ALE/1614368‑1614457 AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGC > 1:1150207/1‑91AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGC < 1:1733810/91‑1AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGC < 1:916515/91‑1AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGC < 2:1731095/91‑1AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGC < 2:1731112/91‑1 TGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCATAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTT < 1:2079250/91‑1 TGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTT < 2:20006/91‑1 GTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTT > 2:1340240/1‑91 GTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTT < 2:857721/91‑1 GTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTT > 2:1340066/1‑91 TATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTT > 2:1319406/1‑91 CTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTT > 2:1188091/1‑91 AAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATAC > 2:3058430/1‑91 AAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATAC > 2:3058356/1‑91 GTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATT > 2:1565209/1‑91 TCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTT > 1:1834082/1‑91 CACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTT > 2:1926119/1‑91 CACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTT > 2:600669/1‑91 CACAATACACATGACTAAAAATGTCTGTGCTATTGCGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTT > 2:906483/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTT > 2:1109633/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTT > 1:1583510/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTT > 2:313586/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGATATACATTTTT > 1:3526005/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCATTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTT > 1:1832290/1‑91 AATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCT > 2:2173828/1‑91 ATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTA > 1:2157200/1‑91 ATACACATGACTAAAAATGTCTGTGCTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTA > 2:3034672/1‑91 TACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAA > 2:1189416/1‑91 CTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGG > 1:2333815/1‑91 TTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGT > 1:3047689/1‑91 TTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGT > 1:3045764/1‑91 TTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGT < 1:2248120/91‑1 TTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGT < 1:3679701/91‑1 TTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGT < 2:81147/91‑1 TTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTA > 1:2256023/1‑91 TGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGT < 2:1442636/91‑1 TGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGT < 2:2256023/91‑1 TGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGATTATACATCTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGT > 1:3095763/1‑91 AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1614413‑1614319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGT > USA300TCH1516_ALE/1614368‑1614457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |