BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1614319 =	184 (0.970)	17 (0.100)	9/150	NT	8.3%	intergenic (+14/+64)	USA300HOU_RS08000/xerD_3	hypothetical protein/Tyrosine recombinase XerD
*	?	USA300TCH1516_ALE	1614368 =	202 (1.130)	17 (0.100)	9/150	NT	8.3%	intergenic (+63/+15)	USA300HOU_RS08000/xerD_3	hypothetical protein/Tyrosine recombinase XerD

Only 100 of 275 total aligned reads displayed.

CAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGTA  >  USA300TCH1516_ALE/1614279‑1614458

cAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGa                                                                                           >  2:1260460/1‑91 (MQ=255)

cAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGa                                                                                           >  2:3680224/1‑91 (MQ=255)

 aaTTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTggg                                                                                          >  1:1648269/1‑89 (MQ=255)

 aaTTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATAATTAGTCATGTGTATTGTGACACTTGAg                                                                                          >  2:899128/1‑91 (MQ=255)

   ttAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGtt                                                                                        <  1:2493751/91‑1 (MQ=255)

   ttAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGtt                                                                                        >  2:436928/1‑91 (MQ=255)

    tAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTa                                                                                       <  2:2932237/91‑1 (MQ=255)

      aGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTAtt                                                                                     >  2:346624/1‑91 (MQ=255)

      aGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTAtt                                                                                     <  1:3552798/91‑1 (MQ=255)

        aaaaCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGt                                                                                   <  2:320816/91‑1 (MQ=255)

        aaaaCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGt                                                                                   <  2:1792734/91‑1 (MQ=255)

          aaCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTc                                                                                 >  2:1167596/1‑91 (MQ=255)

            cATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCAc                                                                               <  2:2652678/91‑1 (MQ=255)

             aTAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACt                                                                              >  2:28170/1‑91 (MQ=255)

             aTAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACt                                                                              <  2:2290267/91‑1 (MQ=255)

              tAGTCGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACtt                                                                             <  1:3498554/91‑1 (MQ=255)

              tAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACtt                                                                             >  1:1448664/1‑91 (MQ=255)

              tAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACtt                                                                             <  2:2055661/91‑1 (MQ=255)

              tAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACtt                                                                             >  2:200610/1‑91 (MQ=255)

                  cGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATg                                                                         >  1:1108887/1‑91 (MQ=255)

                   gTAATTAATCAACCAATTTAAAAAAGCCCCAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGc                                                                        <  1:3721975/91‑1 (MQ=255)

                    taattaatCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGct                                                                       <  1:1615351/91‑1 (MQ=255)

                      attaatCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGctct                                                                     <  1:651909/91‑1 (MQ=255)

                        aagtgaacaataactcAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAg                                                                   >  2:1188091‑M1/17‑91 (MQ=255)

                           tCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGAt                                                                >  2:494355/1‑91 (MQ=255)

                           tCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGAt                                                                >  2:3104695/1‑91 (MQ=255)

                            cAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATg                                                               >  1:2351956/1‑91 (MQ=255)

                             aaCCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGa                                                              <  2:3100185/91‑1 (MQ=255)

                              aCCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGaa                                                             <  2:1694680/91‑1 (MQ=255)

                              aCCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGaa                                                             >  1:1576172/1‑91 (MQ=255)

                                   tttAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTgg                                                        >  1:2140886/1‑91 (MQ=255)

                                     tAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGtt                                                      <  2:2917521/91‑1 (MQ=255)

                                      aaaacaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTta                                                     <  1:3226943/91‑1 (MQ=255)

                                      aaaaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTta                                                     <  1:1776667/91‑1 (MQ=255)

                                      aaaaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTta                                                     >  2:3495389/1‑91 (MQ=255)

                                       aaaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTtat                                                    <  1:1018071/91‑1 (MQ=255)

                                        AAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTtata                                                   >  2:1319406‑M1/1‑91 (MQ=255)

                                         aaagtcacaatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATAc                                                  >  2:3058356‑M2/49‑91 (MQ=255)

                                         AAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATAc                                                  >  2:1340240‑M1/1‑91 (MQ=255)

                                          AAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTATGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACa                                                 <  1:2079250‑M1/91‑1 (MQ=255)

                                            GCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAtt                                               <  1:916515‑M1/91‑1 (MQ=255)

                                            GCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAtt                                               <  2:1731095‑M1/91‑1 (MQ=255)

                                             tcacaatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttt                                              >  1:1834082‑M2/45‑91 (MQ=255)

                                              cacaatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAtttt                                             >  2:600669‑M2/44‑91 (MQ=255)

                                              cacaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAtttt                                             <  1:3632411/91‑1 (MQ=255)

                                              cacaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAtttt                                             <  1:848769/91‑1 (MQ=255)

                                               acaatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            >  2:1109633‑M2/43‑91 (MQ=255)

                                               acaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            <  2:2886996/91‑1 (MQ=255)

                                               acaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            <  2:2452167/91‑1 (MQ=255)

                                               acaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            <  1:3204797/91‑1 (MQ=255)

                                               acaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            >  2:799076/1‑91 (MQ=255)

                                                 aaTAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCt                                          <  2:956383/91‑1 (MQ=255)

                                                  aTAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTa                                         >  2:1036744/1‑91 (MQ=255)

                                                   tacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTaa                                        >  2:1189416‑M2/39‑91 (MQ=255)

                                                    aGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAt                                       >  1:760629/1‑91 (MQ=255)

                                                    aGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAt                                       >  2:1864427/1‑91 (MQ=255)

                                                    aGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAt                                       <  1:973264/91‑1 (MQ=255)

                                                     gCACAGACATTTTTAGTCATTTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAtt                                      >  2:2798892/1‑91 (MQ=255)

                                                     gCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAtt                                      >  1:2434126/1‑91 (MQ=255)

                                                     gCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAtt                                      <  1:567334/91‑1 (MQ=255)

                                                     gCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAtt                                      <  2:2487762/91‑1 (MQ=255)

                                                     gCACAGACATTTTTAGTCATGTGTATTATGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAtt                                      <  2:2079250/91‑1 (MQ=255)

                                                      cacaGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAttt                                     <  2:1502403/91‑1 (MQ=255)

                                                        caGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTga                                   >  1:1738134/1‑91 (MQ=255)

                                                        caGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTga                                   <  1:285173/91‑1 (MQ=255)

                                                         aGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTgag                                  <  2:1587104/91‑1 (MQ=255)

                                                             aTTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGAttt                              <  2:3024709/91‑1 (MQ=255)

                                                              tttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTc                             <  2:3547395/91‑1 (MQ=255)

                                                              tttttAGTCATGTGTATTGTGACTGTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTc                             <  2:3642939/91‑1 (MQ=255)

                                                                tttATTCTTGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTACACATTTTTCAAATTTGAGATTTCGa                           >  2:3359097/1‑91 (MQ=255)

                                                                tttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGa                           >  2:2414814/1‑91 (MQ=255)

                                                                 ttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGaa                          >  1:2711484/1‑91 (MQ=255)

                                                                  tAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGaaa                         <  1:389673/91‑1 (MQ=255)

                                                                  tAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGaaa                         >  1:2516601/1‑91 (MQ=255)

                                                                   aGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAAc                        >  2:2645214/1‑91 (MQ=255)

                                                                   aGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAAc                        <  2:827795/91‑1 (MQ=255)

                                                                    gTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACa                       >  1:2805258/1‑91 (MQ=255)

                                                                       aTGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtgt                    >  1:2456917/1‑91 (MQ=255)

                                                                        tgtgTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtgtg                   <  1:1408492/91‑1 (MQ=255)

                                                                        tgtgTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtgtg                   <  1:819333/91‑1 (MQ=255)

                                                                          tgtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGta                 <  1:366160/91‑1 (MQ=255)

                                                                          tgtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGta                 >  1:3155303/1‑91 (MQ=255)

                                                                          tgtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGta                 <  2:2140886/91‑1 (MQ=255)

                                                                           gtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGtat                <  2:1387990/91‑1 (MQ=255)

                                                                           gtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGtat                >  2:3838314/1‑91 (MQ=255)

                                                                             aTTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATag              >  2:2552309/1‑91 (MQ=255)

                                                                              ttGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATaga             <  1:1152912/91‑1 (MQ=255)

                                                                               tgtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATagag            <  1:44161/91‑1 (MQ=255)

                                                                               tgtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATagag            <  1:2019349/91‑1 (MQ=255)

                                                                               tgtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATagag            <  1:3034672/91‑1 (MQ=255)

                                                                                gtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGt           <  2:3490958/91‑1 (MQ=255)

                                                                                gtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGt           >  2:2184432/1‑91 (MQ=255)

                                                                                gtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGt           >  2:2321797/1‑91 (MQ=255)

                                                                                ctgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGt           <  2:3846936/90‑1 (MQ=255)

                                                                                   aCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTgg        <  1:346475/91‑1 (MQ=255)

                                                                                    cttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTggg       >  1:2333815‑M2/6‑91 (MQ=255)

                                                                                     ttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgt      >  1:3045764‑M2/5‑91 (MQ=255)

                                                                                     ttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgt      <  1:2248120‑M2/87‑1 (MQ=255)

                                                                                        tGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGATTATACATCTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgtagt   >  1:3095763‑M2/2‑91 (MQ=255)

                                                                                         gAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgtagta  >  2:860439/1‑91 (MQ=255)

CAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGTA  >  USA300TCH1516_ALE/1614279‑1614458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.