| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1634329 = | 161 (0.850) | 18 (0.100) | 8/150 | NT | 10.7% | coding (958/993 nt) | bfmBAA | 2‑oxoisovalerate dehydrogenase subunit alpha |
| ? | USA300TCH1516_ALE | 1634371 = | 149 (0.830) | coding (916/993 nt) | bfmBAA | 2‑oxoisovalerate dehydrogenase subunit alpha | |||||
TGGTTGGCAGAAATAGAAGCGGAGCATAAAGACATCATCAATAAAGCGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1634422‑1634329‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcc‑‑‑‑‑‑tTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCATCATCGATAATGCCAGCTGAAAGCAACTCTTTT > USA300TCH1516_ALE/1634371‑1634459 TGGTTGGCAGAAATAGAAGCGGAGCATAAAGACATCATCAATAAAGCGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAG > 1:1032381/1‑91 GGTTGGCAGAAATAGAAGCGGAGCATAAAGACATCATCAATAAAGCGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGC > 1:641608/1‑91 GTTGGCAGAAATAGAAGCGGAGCATAAAGACATCATCAATAAAGCGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC > 1:1274796/1‑91 GTTGGCAGAAATAGAAGCGGAGCATAAAGACATCATCAATAAAGCGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC < 2:975103/91‑1 GTTGGCAGAAATAGAAGCGGAGCATAAAGACATCATCAATAAAGCGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC < 1:3629405/91‑1 GTTGGCAGAAATAGAAGCGGAGCATAAAGACATCATCAATAAAGCGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC < 1:294698/91‑1 TTGGCAGAAATAGAAGCGGAGCATAAAGACATCATCAATAAAGCGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑T > 2:1057192/1‑91 CGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCCTATGCATTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTC > 2:1410002/1‑91 CGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTC > 1:2837567/1‑91 GGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCCAC > 2:440457/1‑91 GCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACC > 2:3351307/1‑91 GCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACC > 2:3351282/1‑91 GCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACC > 2:1415282/1‑91 TGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAA > 1:2285005/1‑91 GCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAG > 2:1051624/1‑91 GCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAG > 1:2781509/1‑91 GCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAG > 2:2378424/1‑91 GCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAG > 2:86265/1‑91 GCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAG > 1:261811/1‑91 GCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCGTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAG > 2:86718/1‑91 CTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGC > 2:3051834/1‑91 CTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGC > 2:3863837/1‑91 TGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCA > 2:908298/1‑91 TGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCA > 2:907223/1‑91 GACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCATCAT > 2:1830095/1‑91 GCC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCATCATCGATAATGCCAGCTGAAAGCAACTCTT > 1:2420868/1‑91 CC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCATCATCGATAATGCCAGCTGAAAGCAACTCTTT < 1:3204746/91‑1 CC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCATCATCGATAATGCCAGCTGAAAGCAACTCTTT > 2:1662888/1‑91 CC‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCATCATCGATAATGCCAGCTGAAAGCAACTCTTT > 1:526097/1‑91 C‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGTTCCGCTTCTAATTCTGCCAACCAAGCATCATCGATAATGCCAGCTGAAAGCAACTCTTTT > 1:3366345/1‑91 C‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCATCATCGATAATGCCAGCTGAAAGCAACTCTTTT < 2:676849/91‑1 C‑‑‑‑‑‑TTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCATCATCGATAATGCCAGCTGAAAGCAACTCTTTT > 1:2609581/1‑91 TGGTTGGCAGAAATAGAAGCGGAGCATAAAGACATCATCAATAAAGCGACAAAGGCTGCTGAAGACGCGCCATATCCAAGTGTCGAAGAAGCC‑‑‑‑‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1634422‑1634329‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcc‑‑‑‑‑‑tTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAACCAAGCATCATCGATAATGCCAGCTGAAAGCAACTCTTTT > USA300TCH1516_ALE/1634371‑1634459 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |