BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1634329 =	161 (0.850)	18 (0.100)	8/150	NT	10.7%	coding (958/993 nt)	bfmBAA	2‑oxoisovalerate dehydrogenase subunit alpha
*	?	USA300TCH1516_ALE	1634371 =	149 (0.830)	18 (0.100)	8/150	NT	10.7%	coding (916/993 nt)	bfmBAA	2‑oxoisovalerate dehydrogenase subunit alpha

Only 100 of 212 total aligned reads displayed.

TGTAATGCTAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAA  >  USA300TCH1516_ALE/1634239‑1634419

 aaaagagttgctttcagctggcattatcgatgatgcttggttggcagaattagaagcggaacataaagacatcatcaataaagcgacaaAg                                                                                           >  1:3366345‑M1/90‑91 (MQ=255)

  tAATGCTAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAgg                                                                                          >  2:1317511/1‑91 (MQ=255)

  tAATGCTAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAgg                                                                                          <  2:2346212/91‑1 (MQ=255)

  aaagagttgctttcagctggcattatcgatgatgcttggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAgg                                                                                          >  2:1662888‑M1/89‑91 (MQ=255)

  aaagagttgctttcagctggcattatcgatgatgcttggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAgg                                                                                          >  1:526097‑M1/89‑91 (MQ=255)

   aaTGCTAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTCGCCATTAGTTAAGACTCCCTTCTTCGTACCCAAATGCATAGGc                                                                                         >  1:3878203/1‑91 (MQ=255)

   aaTGCTAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGc                                                                                         >  1:3223888/1‑91 (MQ=255)

    aTGCTAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGct                                                                                        >  1:3508559/1‑91 (MQ=255)

    aTGCTAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGGACACAAATGCATAGGct                                                                                        <  2:3131693/91‑1 (MQ=255)

      gCTAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGcttc                                                                                      <  2:1341246/91‑1 (MQ=255)

       cTAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGcttct                                                                                     >  1:1968271/1‑91 (MQ=255)

        tAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGcttctt                                                                                    <  1:165377/91‑1 (MQ=255)

         aaGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCttcttc                                                                                   >  2:2680793/1‑91 (MQ=255)

           gTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGa                                                                                 >  2:1891483/1‑91 (MQ=255)

           gTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGa                                                                                 >  2:2209132/1‑91 (MQ=255)

             cTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGaca                                                                               <  1:3204573/91‑1 (MQ=255)

             cTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGaca                                                                               >  2:774135/1‑91 (MQ=255)

              ttGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGacac                                                                              <  2:3260997/91‑1 (MQ=255)

               tgtgCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACt                                                                             <  1:3466613/91‑1 (MQ=255)

               tgtgCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACt                                                                             <  1:3826416/91‑1 (MQ=255)

                gtgCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACtt                                                                            <  1:2306833/91‑1 (MQ=255)

                gtgCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACtt                                                                            >  1:1719640/1‑91 (MQ=255)

                  gCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTgg                                                                          <  2:2873885/91‑1 (MQ=255)

                  gCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTgg                                                                          >  2:1070634/1‑91 (MQ=255)

                  gCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTgg                                                                          >  1:1028378/1‑91 (MQ=255)

                     tGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGata                                                                       <  1:2375900/91‑1 (MQ=255)

                        cGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATgg                                                                    <  1:2628566/91‑1 (MQ=255)

                        cGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATgg                                                                    >  2:1744664/1‑91 (MQ=255)

                         gTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGgc                                                                   <  2:1651968/91‑1 (MQ=255)

                          tATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGgcg                                                                  <  2:3594242/91‑1 (MQ=255)

                           aTCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGgcgc                                                                 >  1:733978/1‑91 (MQ=255)

                            tCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGCATTCTTCGACGCTTGGACATGGcgcg                                                                >  2:3364579/1‑91 (MQ=255)

                              atgatgcttggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTc                                                              >  2:1830095‑M1/61‑91 (MQ=255)

                               ccTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCt                                                             <  1:3741927/91‑1 (MQ=255)

                               ccTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCt                                                             >  2:1734664/1‑91 (MQ=255)

                               ccTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCt                                                             <  2:1120988/91‑1 (MQ=255)

                                ctctAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCtt                                                            >  1:3108800/1‑91 (MQ=255)

                                ctctAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCtt                                                            <  1:2579028/91‑1 (MQ=255)

                                ctctAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCtt                                                            >  2:3807268/1‑91 (MQ=255)

                                  tgcttggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTCTTca                                                          >  2:908298‑M1/57‑91 (MQ=255)

                                   gcttggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTCTTcag                                                         >  2:3051834‑M1/56‑91 (MQ=255)

                                    cttggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTCTTcagc                                                        >  2:2378424‑M1/55‑91 (MQ=255)

                                    cttggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTCTTcagc                                                        >  1:261811‑M1/55‑91 (MQ=255)

                                    cttggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTCTTcagc                                                        >  2:86265‑M1/55‑91 (MQ=255)

                                    cttggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTCTTcagc                                                        >  2:1051624‑M1/55‑91 (MQ=255)

                                    aaaTAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTcagc                                                        <  1:3418069/91‑1 (MQ=255)

                                     aaTAAGATATTTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTcagca                                                       <  1:3483386/91‑1 (MQ=255)

                                     aaTAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTcagca                                                       >  2:1989691/1‑91 (MQ=255)

                                     aaTAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTcagca                                                       >  2:1565669/1‑91 (MQ=255)

                                      aTACGATAATTTTGCTATTAGTTAAGACTCCCTTCTTCGTAGACAATTGATTTGGCATTTTCGACACGTGGATAAGGCGTGACTTctgcag                                                      <  2:3422197/91‑1 (MQ=255)

                                      aTAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTATACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTcagcag                                                      <  2:3422666/91‑1 (MQ=255)

                                       tAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCagcagc                                                     >  1:1595965/1‑91 (MQ=255)

                                       ggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCagcagc                                                     >  2:1415282‑M1/52‑91 (MQ=255)

                                       ggttggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCagcagc                                                     >  2:3351282‑M1/52‑91 (MQ=255)

                                        gtgggcagaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGcc                                                    >  2:440457‑M1/51‑91 (MQ=255)

                                        aaGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGcc                                                    <  1:1301874/91‑1 (MQ=255)

                                         aGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCt                                                   <  1:577458/91‑1 (MQ=255)

                                          gATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCtt                                                  <  2:656774/91‑1 (MQ=255)

                                          gATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCACGTCTTCAGCAGCCtt                                                  >  2:2881974/1‑91 (MQ=255)

                                             aaTTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGt                                               <  1:214570/91‑1 (MQ=255)

                                             aaTTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGt                                               <  2:2158282/91‑1 (MQ=255)

                                              aTTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTc                                              <  1:476349/91‑1 (MQ=255)

                                              aTTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTc                                              <  1:2057674/91‑1 (MQ=255)

                                               tttAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCg                                             <  1:1487282/91‑1 (MQ=255)

                                               gaaatagaagcggagcataaagacatcatcaataaagcgacaaAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCg                                             >  1:2837567‑M1/44‑91 (MQ=255)

                                                ttAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGc                                            <  1:3112693/91‑1 (MQ=255)

                                                 tAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCt                                           <  1:2130220/91‑1 (MQ=255)

                                                 tAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCt                                           <  2:743832/91‑1 (MQ=255)

                                                   gCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATATGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCttt                                         >  2:2590546/1‑91 (MQ=255)

                                                   gCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCttt                                         >  2:1083988/1‑91 (MQ=255)

                                                   gCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCttt                                         >  2:3747488/1‑91 (MQ=255)

                                                   gCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCttt                                         <  1:3785451/91‑1 (MQ=255)

                                                     cATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTAt                                       <  1:3548016/91‑1 (MQ=255)

                                                      aTTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTAtt                                      >  1:2637806/1‑91 (MQ=255)

                                                          gTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATtgatg                                  <  1:1811801/91‑1 (MQ=255)

                                                            tAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTgatgat                                <  1:230002/91‑1 (MQ=255)

                                                             aaGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGatgatg                               >  1:3144362/1‑91 (MQ=255)

                                                             aaGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGatgatg                               <  1:1114513/91‑1 (MQ=255)

                                                               gACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTc                             >  2:877166/1‑91 (MQ=255)

                                                                  tCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGTTATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCttt                          <  1:2288053/91‑1 (MQ=255)

                                                                   cccTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTa                         >  1:83168/1‑91 (MQ=255)

                                                                    ccTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTAt                        <  2:704447/91‑1 (MQ=255)

                                                                       tcttcGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCt                     >  1:1559703/1‑91 (MQ=255)

                                                                        cttcGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTc                    <  1:430841/91‑1 (MQ=255)

                                                                        cttcGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTc                    >  2:3824309/1‑91 (MQ=255)

                                                                          tcGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCg                  <  1:1159996/91‑1 (MQ=255)

                                                                            gTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCt                <  1:2775464/91‑1 (MQ=255)

                                                                             tACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCggag               <  2:2046258/91‑4 (MQ=255)

                                                                             tACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCtt               <  1:2495864/91‑1 (MQ=255)

                                                                              acacAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTc              <  2:1957734/91‑1 (MQ=255)

                                                                               cacaAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCt             >  2:486021/1‑91 (MQ=255)

                                                                               cacaAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCt             >  1:3653362/1‑91 (MQ=255)

                                                                                   aaTGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTAttt         <  1:2909646/91‑1 (MQ=255)

                                                                                    aTGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCTGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTc        >  2:2996754/1‑91 (MQ=255)

                                                                                    aTGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTc        >  1:1202696/1‑91 (MQ=255)

                                                                                     tGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCt       <  1:3864316/91‑1 (MQ=255)

                                                                                     tGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTAAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCt       <  1:1892395/91‑1 (MQ=255)

                                                                                       cATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGc     <  1:1512854/91‑1 (MQ=255)

                                                                                       cATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGc     <  2:837121/91‑1 (MQ=255)

                                                                                       cATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGc     >  1:2648296/1‑91 (MQ=255)

TGTAATGCTAAGTCTTGTGCCTGGCGTATCGCCTCTAAATAAGATAATTTAGCCATTAGTTAAGACTCCCTTCTTCGTACACAAATGCATAGGCTTCTTCGACACTTGGATATGGCGCGTCTTCAGCAGCCTTTGTCGCTTTATTGATGATGTCTTTATGCTCCGCTTCTATTTCTGCCAA  >  USA300TCH1516_ALE/1634239‑1634419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.