| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1647578 | 197 (1.030) | 19 (0.110) | 13/144 | NT | 9.5% | intergenic (+8/+56) | USA300HOU_RS08180/lipM | hypothetical protein/Octanoyltransferase LipM |
| ? | USA300TCH1516_ALE | = 1647617 | 186 (1.090) | intergenic (+47/+17) | USA300HOU_RS08180/lipM | hypothetical protein/Octanoyltransferase LipM | |||||
CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1647481‑1647578‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑at‑aaaaaaT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTTG < USA300TCH1516_ALE/1647617‑1647528 CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAACAGACATCAAAGAAGAAAATAGA > 2:2261507/1‑91CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGA < 2:558546/91‑1CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGA > 2:2261264/1‑91CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGA > 2:1949836/1‑91CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGA < 1:2551122/91‑1CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGA < 2:1179625/91‑1 TGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT < 2:3007426/91‑1 TGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT < 2:2403917/91‑1 TGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT < 1:1969306/91‑1 GATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑A < 1:191506/91‑1 ATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AA < 2:3476662/91‑1 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA < 1:1269492/91‑1 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA > 2:2156216/1‑91 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA > 2:1319171/1‑91 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA > 1:3212257/1‑91 TTTATTATTTCGTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA < 2:1573618/91‑1 TTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAA < 1:824879/91‑1 TATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAA < 2:3868988/91‑1 ATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAA > 1:464862/1‑91 ATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAA > 1:2616595/1‑91 AACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAC‑GGAAGCACGTAGACTATTTTACCTA < 2:2756888/91‑1 AACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACGTAGACTATTTTACCTA < 2:2613299/91‑1 CAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAC‑GGAAGCACGTAGACTATTTTACCTACAAG < 1:2537246/91‑1 CAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAC‑GGAAGCACGTAGACTATTTTACCAACAAG < 2:2740863/91‑1 CAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACGTAGACTATTTTACCAACAAG < 2:2738511/91‑1 GCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAC‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG < 1:2046480/91‑1 CAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGT < 1:1749692/91‑1 CAAAGCAATGCATAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAC‑GGAAGCGCGTAGACTATTTTACCTACAAGTGCTTCCGT < 2:3468308/91‑1 AAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTT < 1:3153924/91‑1 AGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTT < 2:177060/91‑1 CAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAC‑GGAAGCACGTAGACTAGTTTACCTACAAGTGCTTCCGTTTTTT < 2:3213447/91‑1 ATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTAT < 1:1029609/91‑1 GCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCT < 2:2664159/91‑1 GTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTA < 2:1539059/91‑1 GTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTAT < 2:3870128/91‑1 GTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTAT < 2:3639842/91‑1 GTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTAT < 1:3412890/91‑1 AAGAAATCAAAGAAGAAAATAGAT‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTT < 1:882399/91‑1 CAAAGAAGAAAATAGATAAAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTC < 1:2639542/91‑1 AT‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCAT < 2:1793338/91‑1 T‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATT > 2:2185618/1‑91 T‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATT > 2:1470882/1‑91 T‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATT > 1:1324242/1‑91 T‑AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATT > 1:3851145/1‑91 AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTG < 1:1886187/91‑1 AAAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTG < 1:1733655/91‑1 AAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGC > 1:2926078/1‑91 AAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGC > 1:1285534/1‑91 AAAAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGC > 2:1803459/1‑91 AAAAT‑GGAAACACGGAGACCATTTTACCTACAAGTGCTTTCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATTTTTTCGCCTTGCT > 2:383461/1‑91 AAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTT < 1:690613/91‑1 AAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTT > 2:376648/1‑91 AAAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTT > 2:423746/1‑91 AAT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTT < 1:2460982/91‑1 AT‑GGACGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTTG < 2:3578862/91‑1 AT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTTG > 2:323793/1‑91 AT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTTG > 2:1935919/1‑91 CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1647481‑1647578‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑at‑aaaaaaT‑GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTTG < USA300TCH1516_ALE/1647617‑1647528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |