BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1647578	197 (1.030)	19 (0.110)	13/144	NT	9.5%	intergenic (+8/+56)	USA300HOU_RS08180/lipM	hypothetical protein/Octanoyltransferase LipM
*	?	USA300TCH1516_ALE	= 1647617	186 (1.090)	19 (0.110)	13/144	NT	9.5%	intergenic (+47/+17)	USA300HOU_RS08180/lipM	hypothetical protein/Octanoyltransferase LipM

Only 100 of 283 total aligned reads displayed.

GCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTG  >  USA300TCH1516_ALE/1647527‑1647707

gCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                                                            <  2:3813132/91‑1 (MQ=255)

aaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                                                            >  1:3844999‑M1/48‑91 (MQ=255)

aaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                                                            >  1:3406093‑M1/48‑91 (MQ=255)

aaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                                                            >  1:2254622‑M1/48‑91 (MQ=255)

   aaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttt                                                                                         >  2:376648‑M2/1‑88 (MQ=255)

    tatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttt                                                                                         >  2:1325872‑M1/44‑91 (MQ=255)

       cgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTa                                                                                     >  1:3518716‑M1/41‑91 (MQ=255)

       aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttta                                                                                     >  1:1324242‑M2/1‑84 (MQ=255)

        gttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAt                                                                                    >  2:3056234‑M1/40‑91 (MQ=255)

        aTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttat                                                                                    <  2:1793338‑M2/91‑9 (MQ=255)

         ttcagatgaatggatgtttagaaagtagtttttagaatAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAt                                                                                    >  1:2607147‑M1/39‑91 (MQ=255)

         tGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAtt                                                                                   >  2:1103587/1‑91 (MQ=255)

         tGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAtt                                                                                   >  2:2520159/1‑91 (MQ=255)

          gCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTc                                                                                  >  2:2685022/1‑91 (MQ=255)

          gCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTc                                                                                  >  2:1729816/1‑91 (MQ=255)

           cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                                                                 >  1:605321/1‑91 (MQ=255)

               aGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                                                             <  1:1862021/91‑1 (MQ=255)

                 tataAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAac                                                                           <  1:1132298/91‑1 (MQ=255)

                    aaaaGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac                                                                        >  2:1700337/1‑91 (MQ=255)

                     aaaGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactact                                                                       >  2:783934/1‑91 (MQ=255)

                     aaaGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactact                                                                       <  1:289931/91‑1 (MQ=255)

                      aaGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACtt                                                                      <  2:1649615/91‑1 (MQ=255)

                      aaGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACtt                                                                      >  1:890498/1‑91 (MQ=255)

                             cAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                               >  1:3743656/1‑91 (MQ=255)

                             cAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                               >  1:1909130/1‑91 (MQ=255)

                             cAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                               >  2:2038301/1‑91 (MQ=255)

                             cAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                               >  1:3111011/1‑91 (MQ=255)

                               aagaagAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACAt                                                             <  2:1786214/91‑1 (MQ=255)

                                agaagaAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATc                                                            >  1:2378577/1‑91 (MQ=255)

                                agaagaAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATc                                                            >  2:1026074/1‑91 (MQ=255)

                                 gaagaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATcc                                                           >  1:3045855/1‑91 (MQ=255)

                                   agaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAt                                                         <  1:1183096/91‑1 (MQ=255)

                                   agaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAt                                                         <  1:2735041/91‑1 (MQ=255)

                                   agaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAt                                                         <  1:2156216/91‑1 (MQ=255)

                                    gaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAtt                                                        >  2:652137/1‑91 (MQ=255)

                                    gaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAtt                                                        <  1:2805221/91‑1 (MQ=255)

                                      aaaTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCa                                                      >  1:3222994/1‑91 (MQ=255)

                                      aaaTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCa                                                      >  2:3882098/1‑91 (MQ=255)

                                       aaTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt                                                     >  1:12761/1‑91 (MQ=255)

                                        aTAGATAAAAAAA‑CGGAAGCACTTGTCGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc                                                    >  2:2221155/1‑91 (MQ=255)

                                         tAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCt                                                   >  2:1931336/1‑91 (MQ=255)

                                         tAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCt                                                   >  1:1031677/1‑91 (MQ=255)

                                          aGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                                                            >  2:1458893/1‑49 (MQ=255)

                                           gATAAAAAAC‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGa                                                 >  1:1954175/1‑91 (MQ=255)

                                            aTAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGaa                                                <  1:1028776/91‑1 (MQ=255)

                                             tAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                               <  2:371805/91‑1 (MQ=255)

                                             tAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                               <  1:2513572/91‑1 (MQ=255)

                                             tAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                               <  1:1583775/91‑1 (MQ=255)

                                              aaaaaaa‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACg                                              >  2:860106/1‑91 (MQ=255)

                                               AAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                             <  1:1252273‑M1/91‑1 (MQ=255)

                                                AAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGat                                            <  2:2054528‑M1/91‑1 (MQ=255)

                                                    A‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAttt                                        <  1:3680017‑M1/91‑1 (MQ=255)

                                                    A‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAttt                                        <  2:509979‑M1/91‑1 (MQ=255)

                                                    A‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAttt                                        <  1:2427264‑M1/91‑1 (MQ=255)

                                                      cGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCGtttttttatctattttcttctttgatttcttttatacttacgcattgctttgc                                       <  1:2046480‑M2/91‑54 (MQ=255)

                                                      cGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                       >  1:527624/1‑91 (MQ=255)

                                                       ggAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAttttt                                      >  1:2579222/1‑91 (MQ=255)

                                                        gAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTc                                     >  2:927656/1‑91 (MQ=255)

                                                        gAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTc                                     <  1:854503/91‑1 (MQ=255)

                                                          aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                   >  1:2300899/1‑91 (MQ=255)

                                                          aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                   >  2:1365069/1‑91 (MQ=255)

                                                          aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                   >  2:158358/1‑91 (MQ=255)

                                                              cTTGTTGGTAAAATAGTCTACGTGCTTCCGtttttttatctattttcttctttgatttcttttatacttacgcattgctttgcgatatttg                               <  2:2740863‑M2/91‑62 (MQ=255)

                                                              cTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTTTGTTat                               >  2:2901277/1‑90 (MQ=255)

                                                              cTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                               <  2:2192363/91‑1 (MQ=255)

                                                              cTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                               >  2:3313924/1‑91 (MQ=255)

                                                              cTTGTAGGTAAAATAGTCTACGGGCTTCCATTTTTTATTCTAAAAACTTCTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                               <  2:3133277/91‑1 (MQ=255)

                                                                tGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAtt                             <  2:2014231/91‑1 (MQ=255)

                                                                  tAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttct                           <  2:2768988/91‑1 (MQ=255)

                                                                   aGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttctt                          >  2:2183778/1‑91 (MQ=255)

                                                                   aGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATACATCTGAACGATATTTTTCAGTTAAttctt                          <  2:2021923/91‑1 (MQ=255)

                                                                     gTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTcc                        >  1:1743457/1‑91 (MQ=255)

                                                                      tAAAATAGTCTACGTGCTTCCATTTTTTTTTTTTATAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCa                       >  2:1856076/1‑91 (MQ=255)

                                                                       aaaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCAc                      >  1:3315290/1‑91 (MQ=255)

                                                                       aaaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCAc                      >  2:3334277/1‑91 (MQ=255)

                                                                        aaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACt                     <  2:322794/91‑1 (MQ=255)

                                                                         aaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACtt                    <  2:2139525/91‑1 (MQ=255)

                                                                         aaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACtt                    >  2:1169926/1‑91 (MQ=255)

                                                                         aaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACtt                    <  2:2416623/91‑1 (MQ=255)

                                                                          aTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTc                   <  2:1515277/91‑1 (MQ=255)

                                                                           tAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCGTTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCt                  <  2:3599571/91‑1 (MQ=255)

                                                                              tCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGcc               >  2:391152/1‑91 (MQ=255)

                                                                               cTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCa              <  2:2589021/91‑1 (MQ=255)

                                                                               cTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCa              >  1:2818691/1‑91 (MQ=255)

                                                                                 aCGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAt            >  1:234952/1‑91 (MQ=255)

                                                                                 aCGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAt            >  2:674026/1‑91 (MQ=255)

                                                                                  cGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAtt           <  2:328577/91‑1 (MQ=255)

                                                                                  cGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAtt           <  2:1946515/91‑1 (MQ=255)

                                                                                  cGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAtt           <  1:699717/91‑1 (MQ=255)

                                                                                   gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg          <  2:340261/91‑1 (MQ=255)

                                                                                   gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg          <  2:3506787/91‑1 (MQ=255)

                                                                                   gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg          <  2:2616595/91‑1 (MQ=255)

                                                                                      cTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGc       <  1:3798604/91‑1 (MQ=255)

                                                                                      cTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGc       <  1:3401899/91‑1 (MQ=255)

                                                                                       ttCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCt      <  2:3558900/91‑1 (MQ=255)

                                                                                        tCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCtt     <  2:2924851/91‑1 (MQ=255)

                                                                                         ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc    <  1:1730250/91‑1 (MQ=255)

                                                                                         ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc    <  2:3159731/91‑1 (MQ=255)

                                                                                         ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc    <  2:2303955/91‑1 (MQ=255)

                                                                                           aTTTTTTTTTTTTATTACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTg  >  2:700755/1‑91 (MQ=255)

GCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTG  >  USA300TCH1516_ALE/1647527‑1647707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.