New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1647578197 (1.030)19 (0.110) 13/144 NT 9.5% intergenic (+8/+56) USA300HOU_RS08180/lipM hypothetical protein/Octanoyltransferase LipM
?USA300TCH1516_ALE = 1647617 186 (1.090)intergenic (+47/+17) USA300HOU_RS08180/lipM hypothetical protein/Octanoyltransferase LipM

Only 100 of 320 total aligned reads displayed.

ATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATA  >  USA300TCH1516_ALE/1647488‑1647666
                                                                                           |                                                                                        
attattTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAA                                                                                          >  1:464862‑M1/1‑91 (MQ=255)
attattTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAA                                                                                          >  1:2616595‑M1/1‑91 (MQ=255)
   attTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACg                                                                                       >  1:3813132/1‑91 (MQ=255)
    tttCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACgg                                                                                      <  2:2581823/91‑1 (MQ=255)
     ttcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGa                                                                                     >  2:282829/1‑91 (MQ=255)
     ttcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGa                                                                                     >  1:3032546/1‑91 (MQ=255)
     ttcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGa                                                                                     >  1:1649320/1‑91 (MQ=255)
         tcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCa                                                                                 >  2:366207/1‑91 (MQ=255)
          cATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCAc                                                                                <  2:59147/91‑1 (MQ=255)
          cATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCAc                                                                                >  2:550147/1‑91 (MQ=255)
            tCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAGCGGAAGCACtt                                                                              >  1:3515042/1‑91 (MQ=255)
             cgtAACTAAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTg                                                                             <  2:2726927/89‑1 (MQ=255)
             cTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTg                                                                             >  2:1436487/1‑91 (MQ=255)
                 aCTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAgg                                                                         <  1:2390158/91‑1 (MQ=255)
                  cTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGt                                                                        <  2:1511877/91‑1 (MQ=255)
                   tGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTa                                                                       <  2:1102586/91‑1 (MQ=255)
                    gAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTaa                                                                      >  1:3573309/1‑91 (MQ=255)
                     aaGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTaaa                                                                     >  1:1509037/1‑91 (MQ=255)
                       gACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAAt                                                                   <  2:2887517/91‑1 (MQ=255)
                        aCCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATa                                                                  <  1:3664215/91‑1 (MQ=255)
                        aCCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATa                                                                  <  2:1877252/91‑1 (MQ=255)
                           aaCGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAcggaagcacgtagactattttaccta                                                                <  2:2756888‑M1/91‑27 (MQ=255)
                           aaCGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAacggaagcacgtagactattttaccta                                                               <  2:2613299‑M1/91‑28 (MQ=255)
                           aaCGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTc                                                               >  1:1792646/1‑91 (MQ=255)
                            aCGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCt                                                              >  1:2744793/1‑91 (MQ=255)
                             cGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTa                                                             >  2:3107084/1‑91 (MQ=255)
                               cAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACg                                                           <  2:2476693/91‑1 (MQ=255)
                                 aaTATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTg                                                         <  1:549836/91‑1 (MQ=255)
                                  atatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGc                                                        <  1:2433854/91‑1 (MQ=255)
                                  atatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGc                                                        <  1:3819729/91‑1 (MQ=255)
                                   tatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCt                                                       <  1:1439786/91‑1 (MQ=255)
                                     tCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTc                                                     <  2:1793804/91‑1 (MQ=255)
                                     tCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTc                                                     >  1:2589021/1‑91 (MQ=255)
                                     tCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTc                                                     >  2:2147551/1‑91 (MQ=255)
                                      gaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAATGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTc                                                     >  1:2936315‑M1/50‑91 (MQ=255)
                                      gaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTc                                                     >  1:268093‑M1/50‑91 (MQ=255)
                                      cGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAGAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTcc                                                    >  2:3403155/1‑91 (MQ=255)
                                       gCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAcggaagcacgtagactattttacctacaagtgcttccg                                                    <  1:2046480‑M1/91‑39 (MQ=255)
                                       gCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                   <  2:3813132/91‑1 (MQ=255)
                                       gCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                   <  2:2065977/91‑1 (MQ=255)
                                        cAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAt                                                  >  2:1935919‑M2/1‑90 (MQ=255)
                                        cAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAt                                                  >  2:323793‑M2/1‑90 (MQ=255)
                                        cAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCGTCCAt                                                  <  2:3578862‑M2/91‑2 (MQ=255)
                                        aaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                   >  1:3844999‑M1/48‑91 (MQ=255)
                                        aaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                   >  1:2254622‑M1/48‑91 (MQ=255)
                                        aaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                   >  1:3406093‑M1/48‑91 (MQ=255)
                                         aaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAt                                                  >  2:3535047‑M1/47‑91 (MQ=255)
                                         aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgttt                                                 <  1:3153924‑M1/91‑42 (MQ=255)
                                         aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                                 <  1:2460982‑M2/91‑3 (MQ=255)
                                          aatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                                 >  2:1847844‑M1/46‑91 (MQ=255)
                                          aaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttt                                                >  2:376648‑M2/1‑88 (MQ=255)
                                           aGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgttttt                                               <  2:177060‑M1/91‑44 (MQ=255)
                                           aGCAAGGCGAAAAAATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGAAAGCACTTGTAGGTAAAATGGTCTCCGTGTTTCCAtttt                                               >  2:383461‑M2/1‑87 (MQ=255)
                                             cAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAcggaagcacgtagactagtttacctacaagtgcttccgtttttt                                              <  2:3213447‑M1/91‑45 (MQ=255)
                                             cAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttt                                             <  1:1733655‑M2/91‑7 (MQ=255)
                                             cAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttt                                             <  1:1886187‑M2/91‑7 (MQ=255)
                                              aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttta                                            >  1:1324242‑M2/1‑84 (MQ=255)
                                              aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttta                                            >  2:2185618‑M2/1‑84 (MQ=255)
                                              aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttta                                            >  2:1470882‑M2/1‑84 (MQ=255)
                                               cgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTa                                            >  2:3617734‑M1/41‑91 (MQ=255)
                                                tGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAtt                                          >  2:1327332/1‑91 (MQ=255)
                                                 gCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTc                                         <  2:2411234/91‑1 (MQ=255)
                                                    tAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAgg                                                                         >  2:46006/1‑56 (MQ=255)
                                                      aGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                    <  1:1183688/91‑1 (MQ=255)
                                                      aGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                    <  2:1141651/91‑1 (MQ=255)
                                                        tataAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAac                                  <  1:1132298/91‑1 (MQ=255)
                                                            aaaGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAAt                                                                   <  1:2812144/54‑1 (MQ=255)
                                                            aaaGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactact                              >  2:783934/1‑91 (MQ=255)
                                                            aaaGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactact                              >  2:3017052/1‑91 (MQ=255)
                                                            aaaGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactact                              <  1:289931/91‑1 (MQ=255)
                                                             aaGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttcttt                             <  1:882399‑M1/91‑62 (MQ=255)
                                                             aaGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACtt                             <  2:1650356/91‑1 (MQ=255)
                                                              aGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACttt                            <  1:3855201/91‑1 (MQ=255)
                                                                  aTCAAAGAAGAAAATAGAT‑AAAAAAACGG‑AGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                       >  2:279868/1‑91 (MQ=255)
                                                                    cAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                      >  1:911646/1‑91 (MQ=255)
                                                                    cAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                      >  1:1909130/1‑91 (MQ=255)
                                                                    cAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                      >  1:3743634/1‑91 (MQ=255)
                                                                     aaaGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACa                     <  1:2314256/91‑1 (MQ=255)
                                                                      aagaagAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACAt                    <  2:1792646/91‑1 (MQ=255)
                                                                          agaaAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac                               <  2:3304627/76‑1 (MQ=255)
                                                                          agaaAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac                               >  1:3304627/1‑76 (MQ=255)
                                                                          agaaAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAt                <  1:2156216/91‑1 (MQ=255)
                                                                           gaaAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAtt               >  2:652137/1‑91 (MQ=255)
                                                                              aaTAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt            >  2:1061502/1‑91 (MQ=255)
                                                                               aTAGAT‑AAAAAAACGGAAGCACTTGTCGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc           >  2:2221155/1‑91 (MQ=255)
                                                                               aTAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttac           <  1:3412890‑M2/91‑41 (MQ=255)
                                                                               aTAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttac           <  2:3870128‑M2/91‑41 (MQ=255)
                                                                                tAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttttatctattttcttctttgatttcttttatacttac          <  2:1539059‑M2/91‑42 (MQ=255)
                                                                                tAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCt          >  2:1931336/1‑91 (MQ=255)
                                                                                tAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCt          >  1:1031677/1‑91 (MQ=255)
                                                                                 aGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg         >  1:28233/1‑91 (MQ=255)
                                                                                  gAT‑AAAAAACCGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGa        >  1:1954175/1‑91 (MQ=255)
                                                                                  gAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGa        >  2:1725372/1‑91 (MQ=255)
                                                                                  gAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGa        >  1:3088903/1‑91 (MQ=255)
                                                                                   aT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGaa       <  1:1028776/91‑1 (MQ=255)
                                                                                    t‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc      <  2:371805/91‑1 (MQ=255)
                                                                                    t‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc      <  1:2513766/91‑1 (MQ=255)
                                                                                       aaaaatggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgc    >  1:1285534‑M1/1‑5 (MQ=255)
                                                                                       AAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa    <  1:1252273‑M1/91‑1 (MQ=255)
                                                                                         aaatggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgctt  <  1:690613‑M1/91‑89 (MQ=255)
                                                                                           |                                                                                        
ATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATA  >  USA300TCH1516_ALE/1647488‑1647666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.