New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 166536281 (0.430)14 (0.110) 10/108 NT 20.5% intergenic (‑237/+40) sodA/zur Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein
?USA300TCH1516_ALE = 1665378 54 (0.420)intergenic (‑253/+24) sodA/zur Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein

Only 100 of 147 total aligned reads displayed.

CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1665247‑1665362
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatataaagaaatgagatttatgcaCATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGGCA  <  USA300TCH1516_ALE/1665378‑1665289
                                                                                                                                                                                                              
CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTAT                                                                                                                     >  1:532351/1‑91
CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTAT                                                                                                                     >  1:2205297/1‑91
CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTAT                                                                                                                     >  1:2204328/1‑91
 AAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATA                                                                                                                    >  1:1141849/1‑91
   AAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAACATCATACGAACGGAGCATGAAATGAACCTTTATCTTCTATAAT                                                                                                                  >  2:3353568/1‑91
   AAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAAT                                                                                                                  <  1:105575/91‑1
   AAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAAT                                                                                                                  >  1:691527/1‑91
   AAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAAT                                                                                                                  >  1:691526/1‑91
   AAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAAT                                                                                                                  >  1:3633842/1‑91
   AAAGAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAAT                                                                                                                  <  2:1346753/91‑1
    AATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATA                                                                                                                 <  1:3016013/91‑1
    AATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATA                                                                                                                 <  2:309070/91‑1
    AATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATA                                                                                                                 <  2:1695847/91‑1
    AATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATA                                                                                                                 <  2:309088/91‑1
     ATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATAT                                                                                                                >  1:3663176/1‑91
     ATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATAT                                                                                                                >  2:3497459/1‑91
     ATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATAT                                                                                                                >  1:2058652/1‑91
      TAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATA                                                                                                               >  2:1573460/1‑91
      TAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATA                                                                                                               <  1:1411817/91‑1
      TAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATA                                                                                                               <  1:2381490/91‑1
      TAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATA                                                                                                               <  2:429762/91‑1
      TAATTAAACACAATGTATATAAAAAGTTAACAGATTTGCCTTAAAATCATACGAACTGAGTATGAAATGAACCTTTATCTTCTATAATATA                                                                                                               <  2:1374118/91‑1
        ATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAA                                                                                                              >  2:2940872/1‑90
        ATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAA                                                                                                              <  1:2940872/90‑1
         TTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAG                                                                                                            <  1:637288/91‑1
         TTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAG                                                                                                            <  2:2738284/91‑1
           AAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAA                                                                                                          >  2:3308932/1‑91
             ACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAT                                                                                                        <  1:2358123/91‑1
             ACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAT                                                                                                        >  1:894594/1‑91
              CATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCCTTATCTTCTATAATATAAAGAAATa                                                                                                       >  2:3857755/1‑90
              CATTTTGCATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATG                                                                                                       <  1:1939193/91‑1
              CATTTTGCATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATG                                                                                                       <  1:1938947/91‑1
               ATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGA                                                                                                      <  2:1232860/91‑1
                 TTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGA                                                                                                    <  2:2797233/91‑1
                  TTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAAGGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGAT                                                                                                   <  1:3883374/91‑1
                   TGTATATAAAAAGTTAACAGATTTGCCATAAAAGCATACGAACGGAGTATGAAATGAACTTTTATCTTCTATAATATAAAGAAATGAGATT                                                                                                  <  1:3445562/91‑1
                    GTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTT                                                                                                 >  1:58462/1‑91
                    GTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAAGAGATTT                                                                                                 >  2:3462489/1‑91
                     TATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTA                                                                                                >  2:2351284/1‑91
                     TATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGACTTA                                                                                                >  2:1159678/1‑91
                       TATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATG                                                                                              >  2:3779349/1‑91
                       TATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATG                                                                                              <  2:2318766/91‑1
                       TATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATG                                                                                              <  2:2318631/91‑1
                        ATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGCAATGAACCTTTACCTTCTATAATATAAAGAAATGAGATTTATGC                                                                                             >  1:3093977/1‑91
                        ATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGC                                                                                             >  2:2298129/1‑91
                         TAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCA                                                                                            <  2:1673031/91‑1
                                  AACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTC                                                                                   >  1:1511021/1‑91
                                              ATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCAT                                                                       <  2:2613255/91‑1
                                              ATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCAT                                                                       <  2:2364837/91‑1
                                                AAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAA                                                                     <  2:2236999/91‑1
                                                  AATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAAT                                                                   <  1:2500452/91‑1
                                                  AATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAAT                                                                   <  1:2227241/91‑1
                                                     CATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTC                                                                <  2:1511021/91‑1
                                                      ATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCA                                                               <  2:157405/91‑1
                                                        ACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTA                                                                                                >  1:96160/1‑56
                                                               GAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTAT                                                      <  1:2680785/91‑1
                                                                                          TAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCAT                           >  2:243675/1‑91
                                                                                          TAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTGTATATTATAGAAGATAAAGGTTCATTTCAT                           >  1:2215753/1‑91
                                                                                           AATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAGATCTCATTTCTTTATATTACAGAAGATAAAGGTTCATTTCATA                          >  2:3615844/1‑91
                                                                                           AATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATA                          <  2:3036827/91‑1
                                                                                           AATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATA                          <  2:2203126/91‑1
                                                                                            ATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATAC                         >  1:1587142/1‑91
                                                                                            ATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATAC                         <  1:89412/91‑1
                                                                                            ATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATAC                         >  1:3709668/1‑91
                                                                                                 AAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGT                    <  1:1791667/91‑1
                                                                                                 AAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGT                    >  2:3391819/1‑91
                                                                                                  AGAAATGAGAATTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTT                   <  1:138480/91‑1
                                                                                                   GAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTC                  >  2:2000194/1‑91
                                                                                                     AATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGT                >  2:2056139/1‑91
                                                                                                     AATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCAT                           >  1:3191039/1‑80
                                                                                                     AATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCAT                           <  2:3191039/80‑1
                                                                                                      ATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTA               >  2:591471/1‑91
                                                                                                      ATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTA               <  2:2148418/91‑1
                                                                                                      ATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTA               <  1:1088953/91‑1
                                                                                                      ATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTA               <  2:2148465/91‑1
                                                                                                       TGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTAT              >  2:1524622/1‑91
                                                                                                       TGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTAT              <  1:2289914/91‑1
                                                                                                       TGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTAT              <  2:2478451/91‑1
                                                                                                       TGAGACTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTAT              <  2:3569825/91‑1
                                                                                                        GAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATG             <  2:2641318/91‑1
                                                                                                         AGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGA            <  1:476109/91‑1
                                                                                                         AGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGA            >  1:3433601/1‑91
                                                                                                         AGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGA            >  2:532351/1‑91
                                                                                                         AGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGA            >  2:3278764/1‑91
                                                                                                         AGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACCCCGTTCGTATGA            >  1:2953875/1‑91
                                                                                                          GATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGAT           >  1:3813873/1‑91
                                                                                                          GATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGAT           >  1:2001029/1‑91
                                                                                                           ATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATT          >  1:1847806/1‑91
                                                                                                             TTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTT        >  1:2807121/1‑91
                                                                                                              TATGCGCATTTGGTCAGATGTATGCTTAAATCTCATTTCGTTATATTATAGAATATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTA       <  1:3615844/91‑1
                                                                                                              TATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTA       <  1:515951/91‑1
                                                                                                               ATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTAT      <  1:3202576/91‑1
                                                                                                               ATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTAT      <  1:3296516/91‑1
                                                                                                                 GCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGG    <  2:3495972/91‑1
                                                                                                                 GCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGG    <  2:3580536/91‑1
                                                                                                                 GCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGG    <  2:3580863/91‑1
                                                                                                                 GCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGG    <  1:1798808/91‑1
                                                                                                                  CACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGGC   <  1:2345164/91‑1
                                                                                                                   ACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGGCA  >  1:1341041/1‑91
                                                                                                                   ACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGGCA  <  1:61592/91‑1
                                                                                                                                                                                                              
CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1665247‑1665362
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatataaagaaatgagatttatgcaCATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGGCA  <  USA300TCH1516_ALE/1665378‑1665289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.