| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1665362 | 81 (0.430) | 14 (0.110) | 10/108 | NT | 20.5% | intergenic (‑237/+40) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein |
| ? | USA300TCH1516_ALE | = 1665378 | 54 (0.420) | intergenic (‑253/+24) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein | |||||
Only 100 of 239 total aligned reads displayed.
TTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGT > USA300TCH1516_ALE/1665288‑1665468 | ccATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgc < 1:1798808‑M2/91‑4 (MQ=255) caaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGc > 1:3743660‑M1/47‑91 (MQ=255) aTAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcat < 1:3296516‑M2/91‑6 (MQ=255) aTAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcat < 1:3204519‑M2/91‑6 (MQ=255) acacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATa > 1:882974‑M1/44‑91 (MQ=255) cacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATaa > 1:2838224‑M1/43‑91 (MQ=255) acaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATaaa > 2:3483865‑M1/42‑91 (MQ=255) aaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaa > 2:331472‑M2/1‑83 (MQ=255) caaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAAt > 1:2092223‑M1/41‑91 (MQ=255) aTCATACGAACGGAGTATGAAATGTACCTTTATCTTCTATAATATAAAGAGATGAGATTTATGCATACATCTGACCAAATGtgcataaatc > 2:3598470‑M2/1‑81 (MQ=255) aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatc > 1:2000992‑M2/1‑81 (MQ=255) aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatc > 1:3813523‑M2/1‑81 (MQ=255) tCATACGAACGGGGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatct > 1:2953875‑M2/1‑80 (MQ=255) tCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatct < 1:476109‑M2/91‑12 (MQ=255) tCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatct > 1:3433601‑M2/1‑80 (MQ=255) aTACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataactctca < 2:3569826‑M2/91‑14 (MQ=255) aTACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctca > 2:1252183‑M2/1‑78 (MQ=255) aTACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctca < 2:2478451‑M2/91‑14 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat > 1:668705‑M2/1‑77 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat < 2:2146900‑M2/91‑15 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat < 1:1088953‑M2/91‑15 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat < 2:2148465‑M2/91‑15 (MQ=255) aCGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatt > 2:2056139‑M2/1‑76 (MQ=255) gAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttc > 2:2000194‑M2/1‑74 (MQ=255) aaCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataattctcatttct < 1:138480‑M2/91‑19 (MQ=255) aCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctt < 1:1791667‑M2/91‑20 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat > 1:1587142‑M2/1‑67 (MQ=255) tATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatt < 2:3036827‑M2/91‑26 (MQ=255) atgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatt > 1:3191039‑M2/1‑65 (MQ=255) atgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatt < 2:3191039‑M2/80‑16 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa < 2:3425256/91‑1 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa < 2:1441888/91‑1 (MQ=255) aaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATc < 2:2780293/91‑1 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt < 1:2180735/91‑1 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt < 1:1916639/91‑1 (MQ=255) atgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCtt < 2:2260262/91‑1 (MQ=255) tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg < 2:507356/91‑1 (MQ=255) aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGc > 2:580260/1‑91 (MQ=255) ccTTTATCTTCTATTATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa > 2:2652914/1‑91 (MQ=255) ccTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa < 2:1633383/91‑1 (MQ=255) cTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTCTATTAATCTTGGCAAg > 2:3712375/1‑91 (MQ=255) tATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACt < 1:1573375/91‑1 (MQ=255) aTCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTc < 2:943232/91‑1 (MQ=255) tcttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTca < 2:1141849/91‑1 (MQ=255) cttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTcac < 1:170586/91‑1 (MQ=255) gtctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTcaca < 1:2797357/90‑1 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:848876/1‑91 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:2667906/1‑91 (MQ=255) TAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATacac > 1:3580536‑M1/1‑91 (MQ=255) AATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACAcc > 2:471883‑M1/1‑91 (MQ=255) gTATAAAGAAATGAGATTTATGCATACATCTGACCAGATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCa > 2:3838997‑M1/2‑91 (MQ=255) TATAAAGAAGTGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCAt > 1:3714407‑M1/1‑91 (MQ=255) ataaAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactc < 1:2680785‑M2/91‑54 (MQ=255) ATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTACTCTTGGCAAGACTCACATACACCATa < 2:2354334‑M1/91‑1 (MQ=255) TAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATaa < 2:2933071‑M1/91‑1 (MQ=255) AAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc < 2:1005299‑M1/91‑1 (MQ=255) AAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc < 1:1350361‑M1/91‑1 (MQ=255) AGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACt < 1:966341‑M1/91‑1 (MQ=255) gAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttc < 1:1195881‑M2/91‑59 (MQ=255) GAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt > 1:580260‑M1/1‑91 (MQ=255) GAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt > 2:2204328‑M1/1‑91 (MQ=255) GAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt > 1:297179‑M1/1‑91 (MQ=255) AAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTc > 2:2276886‑M1/1‑91 (MQ=255) AAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTc > 1:2265432‑M1/1‑91 (MQ=255) TGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAg > 2:3459335‑M1/1‑91 (MQ=255) gagaTTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatg < 2:1511021‑M2/91‑64 (MQ=255) GAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCACAAACTTGAAgt > 1:2351100‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:310146‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:2091231‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:1679136‑M1/1‑91 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt > 2:716685‑M1/1‑91 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt < 1:2393651‑M1/91‑1 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt < 2:1002741‑M1/91‑1 (MQ=255) aTTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgatt < 1:2227219‑M2/91‑67 (MQ=255) aTTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgatt < 1:2500452‑M2/91‑67 (MQ=255) TTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgt < 1:3867464‑M1/91‑1 (MQ=255) ttATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgatttt < 2:2236999‑M2/91‑69 (MQ=255) aTGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat < 1:779372‑M2/91‑71 (MQ=255) aTGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat < 2:2613255‑M2/91‑71 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt < 1:2146900‑M1/91‑1 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt < 1:2148465‑M1/91‑1 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt > 1:2234333‑M1/1‑91 (MQ=255) TGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgttt < 2:2503705‑M1/91‑1 (MQ=255) TGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgttt > 1:750276‑M1/1‑91 (MQ=255) TGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgttt < 2:1208467‑M1/91‑1 (MQ=255) TGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgttt > 2:1566510‑M1/1‑91 (MQ=255) GCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttg < 1:604517‑M1/91‑1 (MQ=255) CATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttgt < 2:3512409‑M1/91‑1 (MQ=255) ATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg > 1:826118‑M1/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 1:3798259/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 2:1752829/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 2:1072019/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 2:792036/1‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac > 1:3751980/1‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac > 1:1333394/1‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac < 1:2641318/91‑1 (MQ=255) cAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAacac > 1:3656530/1‑91 (MQ=255) cAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAacac > 1:1116958/1‑91 (MQ=255) aTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAg < 1:2298129/91‑1 (MQ=255) gtgCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGt > 2:647488/1‑91 (MQ=255) | TTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGT > USA300TCH1516_ALE/1665288‑1665468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |