| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1665362 | 81 (0.430) | 14 (0.110) | 10/108 | NT | 20.5% | intergenic (‑237/+40) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein |
| ? | USA300TCH1516_ALE | = 1665378 | 54 (0.420) | intergenic (‑253/+24) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein | |||||
Only 100 of 336 total aligned reads displayed.
TAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTG > USA300TCH1516_ALE/1665272‑1665452 | tacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCa > 1:2696223‑M1/66‑91 (MQ=255) aaGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACa > 2:3244865/1‑91 (MQ=255) aaGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACa < 1:262738/91‑1 (MQ=255) gTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATc > 2:819942/1‑91 (MQ=255) tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg < 1:3117126/91‑1 (MQ=255) gttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTg > 2:3796619‑M1/58‑91 (MQ=255) aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa < 1:1772237/91‑1 (MQ=255) aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa < 1:2271794/91‑1 (MQ=255) aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa > 1:3708930/1‑91 (MQ=255) aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTCTATCTTCTATAATATAAAGAAATGAGCCTTATGCACACATCTGa > 2:2425755/1‑91 (MQ=255) aCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAc < 2:3708930/91‑1 (MQ=255) aCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAc > 1:664742/1‑91 (MQ=255) aCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAc > 1:1809650/1‑91 (MQ=255) tttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGCGATTTATGCATACATCTGACCaaac > 2:1061187/1‑90 (MQ=255) gCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtg < 1:417209‑M2/91‑3 (MQ=255) ccATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgc < 2:3580536‑M2/91‑4 (MQ=255) ccATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgc < 2:3495973‑M2/91‑4 (MQ=255) aacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAt > 1:1876305‑M1/45‑91 (MQ=255) aTAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcat < 2:2613255‑M1/91‑22 (MQ=255) aTAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcat < 2:2364837‑M1/91‑22 (MQ=255) aTAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcat < 1:779372‑M1/91‑22 (MQ=255) acacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATa > 1:791637‑M1/44‑91 (MQ=255) aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg > 2:847593/1‑76 (MQ=255) aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataa > 1:2807121‑M2/1‑84 (MQ=255) aaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaat < 1:2227219‑M1/91‑26 (MQ=255) aaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAAtc > 2:392391‑M1/40‑91 (MQ=255) aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatc > 1:3813873‑M2/1‑81 (MQ=255) aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatc > 1:2001029‑M2/1‑81 (MQ=255) tCATACGAACGGGGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatct > 1:2953887‑M2/1‑80 (MQ=255) tCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatct < 1:476109‑M2/91‑12 (MQ=255) aTACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctca < 2:157405‑M1/91‑30 (MQ=255) aTACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctca > 2:1252183‑M2/1‑78 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat < 2:2148418‑M2/91‑15 (MQ=255) cGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcattt < 1:2887473‑M1/91‑33 (MQ=255) gAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttc > 2:3066601‑M2/1‑74 (MQ=255) aaCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataattctcatttct < 1:138480‑M2/91‑19 (MQ=255) aCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctt > 2:3391819‑M2/1‑72 (MQ=255) gAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttat < 2:2300641‑M2/91‑23 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat < 1:89412‑M2/91‑25 (MQ=255) tATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatt < 2:2203126‑M2/91‑26 (MQ=255) atgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatt > 1:3191039‑M2/1‑65 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa < 1:2106403/91‑1 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa > 2:297179/1‑91 (MQ=255) aaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATc < 2:2780293/91‑1 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt < 1:2180735/91‑1 (MQ=255) atgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCtt < 2:2260262/91‑1 (MQ=255) gaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTgg < 2:2058652/91‑1 (MQ=255) aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagat < 1:3457724‑M2/91‑35 (MQ=255) aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGc > 2:580260/1‑91 (MQ=255) aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGc > 1:86641/1‑91 (MQ=255) ccTTTATCTTCTATTATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa > 2:2652914/1‑91 (MQ=255) ccTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa < 2:1633383/91‑1 (MQ=255) ttATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGAc > 1:2455369/1‑91 (MQ=255) tATCTTCTATAATATAATGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACt < 1:1573460/91‑1 (MQ=255) cttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTcac < 1:170586/91‑1 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:848876/1‑91 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:2667907/1‑91 (MQ=255) ataatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATaca > 1:540748/1‑91 (MQ=255) TAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATacac > 1:3580536‑M1/1‑91 (MQ=255) TATAAAGAAGTGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCAt > 1:3714407‑M1/1‑91 (MQ=255) ataaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactc < 1:1542859‑M1/91‑70 (MQ=255) ataaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactc < 1:2328402‑M1/91‑70 (MQ=255) ATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATa < 2:1932237‑M1/91‑1 (MQ=255) TAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATaa < 1:3744634‑M1/91‑1 (MQ=255) AAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc < 2:1005299‑M1/91‑1 (MQ=255) AAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc > 2:2022732‑M1/1‑91 (MQ=255) gAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttc < 1:1195881‑M2/91‑59 (MQ=255) aaTGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgt > 2:1744830‑M1/1‑15 (MQ=255) AATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCa < 2:2100477‑M1/91‑1 (MQ=255) AATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCa > 1:1981990‑M1/1‑91 (MQ=255) aTGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgta < 1:1088953‑M1/91‑78 (MQ=255) tGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtat < 2:2478451‑M1/91‑79 (MQ=255) tGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtat > 2:1524622‑M1/1‑13 (MQ=255) tGAGAGTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtat < 2:3569826‑M1/91‑79 (MQ=255) GAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCACAAACTTGAAgt > 1:2351100‑M1/1‑91 (MQ=255) atattTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatga < 2:145956‑M1/89‑81 (MQ=255) agaTTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatga > 1:3433601‑M1/1‑11 (MQ=255) agaTTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcataccccgttcgtatga > 1:2953875‑M1/1‑11 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:517989‑M1/1‑91 (MQ=255) gaTTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgat > 1:3813523‑M1/1‑10 (MQ=255) gaTTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgat > 1:2537664‑M1/1‑10 (MQ=255) gaTTTATGCAcatttggtcagatgtatgcataaatctcatctctttatattatagaagataaaggtacatttcatactccgttcgtatgat > 2:3598470‑M1/1‑10 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt > 2:716685‑M1/1‑91 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt < 2:3102504‑M1/91‑1 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt < 2:1002741‑M1/91‑1 (MQ=255) ATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttg < 2:3429632‑M1/91‑1 (MQ=255) tttATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattt > 2:331472‑M1/1‑8 (MQ=255) ttATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgatttt < 2:2236999‑M2/91‑69 (MQ=255) aTGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat < 1:3204519‑M1/91‑87 (MQ=255) aTGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat < 1:3296516‑M1/91‑87 (MQ=255) aTGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagata < 1:2174901‑M1/56‑52 (MQ=255) aTGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagata > 2:2174901‑M1/1‑5 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt > 1:2234333‑M1/1‑91 (MQ=255) TGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgttt < 2:2503705‑M1/91‑1 (MQ=255) TGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgttt < 2:1208467‑M1/91‑1 (MQ=255) gCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatgg < 2:3495972‑M1/91‑89 (MQ=255) gCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatgg < 1:1798726‑M1/91‑89 (MQ=255) CATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttgt > 1:724980‑M1/1‑91 (MQ=255) acatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggca < 1:61592‑M1/91‑91 (MQ=255) acatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggca > 1:1341041‑M1/1‑1 (MQ=255) | TAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTG > USA300TCH1516_ALE/1665272‑1665452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |