| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1693755 = | 192 (1.010) | 12 (0.070) | 5/140 | NT | 7.0% | coding (1040/1158 nt) | hemN_1 | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR |
| ? | USA300TCH1516_ALE | 1693791 = | 153 (0.920) | coding (1004/1158 nt) | hemN_1 | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR | |||||
AAGAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1693854‑1693755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTTT > USA300TCH1516_ALE/1693791‑1693879 AAGAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAATAGAAGTTTGACCAATCTATTGAAAGTGTCTT < 2:2964764/91‑1AAGAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTT > 2:560481/1‑91AAGAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTT < 1:233968/91‑1AAGAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTT > 1:2334560/1‑91AAGAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTT > 2:560402/1‑91 AGAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTT > 1:1895402/1‑91 AGAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTT > 2:1736797/1‑91 AGAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTT > 2:1344075/1‑91 GAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTG < 1:2014360/91‑1 GAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTG < 2:2004606/91‑1 AAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGG < 2:3149452/91‑1 AGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGT < 1:200010/91‑1 GAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTC < 1:591882/91‑1 GAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTC < 1:592060/91‑1 AAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCA > 1:3307704/1‑91 AAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCA > 1:2893605/1‑91 AATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAA < 1:2118638/91‑1 AATGTTTCTTGGGTTGCGTTTAAATGAAGGAGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAA > 2:2499151/1‑91 ATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAAA > 1:835927/1‑91 TGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAAAC > 1:217341/1‑91 TGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAAAC < 2:534824/91‑1 TGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAAAC > 1:2947470/1‑91 TGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAAAC < 2:432268/91‑1 TGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAAAC > 2:2572819/1‑91 TGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCT > 1:2478013/1‑91 TGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCT > 1:2477907/1‑91 TTGACCAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACAGCTTCATTTAAACGCAACCCAAGAAACATT > 1:2158122/1‑91 TTGACCAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATT > 2:2956248/1‑91 TTGACCAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATT > 1:2151912/1‑91 TGACCAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTT > 2:117656/1‑91 TGACCAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTT > 1:2912090/1‑91 TGACCAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTT > 1:2912030/1‑91 ACCAATTTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCT > 1:3015802/1‑91 ACCAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCT > 2:3470787/1‑91 CAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTC > 1:600105/1‑91 CAATCTATTGAAAGTGTCTTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTC > 1:1500746/1‑91 TGGTCAAACTTCTTTTTGAGCCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAG > 2:2842908/1‑91 TGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAG < 1:1373272/91‑1 TGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAG < 1:1373265/91‑1 TGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAG < 1:1373677/91‑1 GGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGA < 2:839648/91‑1 GGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGA < 1:522471/91‑1 GTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAA < 1:959047/91‑1 GTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAA < 2:2689443/91‑1 GTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAA < 2:249395/91‑1 GTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAA < 2:1107922/91‑1 GTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAA < 2:1701443/91‑1 GTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAA < 2:1701466/91‑1 TCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAG > 1:3463843/1‑91 CAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGG < 1:514601/91‑1 CAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGG > 1:2861157/1‑91 CAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGG > 1:79578/1‑91 CAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGG < 1:3831400/91‑1 AAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGT > 1:2873752/1‑91 AAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGT > 2:304214/1‑91 AAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTACTTCTTCCATTCTCTCAGTCAAAGAAGGT < 2:3378961/91‑1 AACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTT < 1:3192359/91‑1 AACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTT < 2:3319143/91‑1 AACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTT < 1:2171469/91‑1 AACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTT < 1:2171272/91‑1 AACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTT > 2:2011935/1‑91 ACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTTT > 1:1670812/1‑91 ACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTTT > 2:772844/1‑91 AAGAAGAAATGTTTCTTGGGTTGCGTTTAAATGAAGGTGTGAGTAGTAGTAGGTTCAAAAAGAAGTTTGACCAATCTATTGAAAGTGTCTTTGGTCAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1693854‑1693755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTTT > USA300TCH1516_ALE/1693791‑1693879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |