BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1693755 =	192 (1.010)	12 (0.070)	5/140	NT	7.0%	coding (1040/1158 nt)	hemN_1	Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR
*	?	USA300TCH1516_ALE	1693791 =	153 (0.920)	12 (0.070)	5/140	NT	7.0%	coding (1004/1158 nt)	hemN_1	Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR

Only 100 of 252 total aligned reads displayed.

GCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTTTAT  >  USA300TCH1516_ALE/1693701‑1693881

 cAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAActt                                                                                           >  2:2529886/1‑91 (MQ=255)

  aaTCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAActtc                                                                                          >  2:523398/1‑91 (MQ=255)

  aaTCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAActtc                                                                                          <  2:1362209/91‑1 (MQ=255)

   aTCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAActtct                                                                                         >  1:864000/1‑91 (MQ=255)

   aTCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAActtct                                                                                         >  2:3879220/1‑91 (MQ=255)

   aTCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTGATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAActtct                                                                                         >  1:3866763/1‑91 (MQ=255)

    tCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAActtctt                                                                                        >  2:2379568/1‑91 (MQ=255)

    tCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAActtctt                                                                                        >  1:1693376/1‑91 (MQ=255)

     cacaTCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCttt                                                                                       >  2:2650805/1‑91 (MQ=255)

      acaTCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCtttt                                                                                      >  1:3516431/1‑91 (MQ=255)

      acaTCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCtttt                                                                                      <  2:2559192/91‑1 (MQ=255)

      acaTCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCtttt                                                                                      <  2:2303766/91‑1 (MQ=255)

         tCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGa                                                                                   <  2:379962/91‑1 (MQ=255)

         tCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGa                                                                                   <  2:1329728/91‑1 (MQ=255)

           gTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAAc                                                                                 <  1:1997231/91‑1 (MQ=255)

            ttCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAAcc                                                                                >  1:281005/1‑91 (MQ=255)

               ttttCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctac                                                                             >  1:2074928/1‑91 (MQ=255)

                tttCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctact                                                                            >  2:1407028/1‑91 (MQ=255)

                  tCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctactac                                                                          <  1:816336/91‑1 (MQ=255)

                    tACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctactacta                                                                        <  1:433329/91‑1 (MQ=255)

                      cAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTactactact                                                                      >  1:2009200/1‑91 (MQ=255)

                      cAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTactactact                                                                      >  1:77650/1‑91 (MQ=255)

                      cAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTactactact                                                                      <  1:30530/91‑1 (MQ=255)

                        attaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTca                                                                    <  1:3390936/91‑1 (MQ=255)

                        attaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTca                                                                    >  1:2293937/1‑91 (MQ=255)

                        attaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTca                                                                    <  2:3589453/91‑1 (MQ=255)

                        aggtgtgagtagtagtaggttcaaaaagaaGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTca                                                                    >  1:2477907‑M1/31‑91 (MQ=255)

                         ttaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTcac                                                                   <  2:2658398/91‑1 (MQ=255)

                         ttaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTcac                                                                   <  2:3083875/91‑1 (MQ=255)

                          taattCTTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTcaca                                                                  <  2:2033559/91‑1 (MQ=255)

                            attCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACAcc                                                                >  1:2900536/1‑91 (MQ=255)

                             ttCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCt                                                               >  2:2508381/1‑91 (MQ=255)

                             tgagtagtagtaggttcaaaaagaagtttgaccaatctattgaaagtgtctttggtcaaacTTCTTTTTGAACCTACTACTACTCACACCt                                                               >  1:2478013‑M2/62‑91 (MQ=255)

                               ccTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTc                                                             <  2:659537/91‑1 (MQ=255)

                               ccTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTc                                                             >  1:2677522/1‑91 (MQ=255)

                                   ctctTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCAttt                                                         >  2:1815093/1‑91 (MQ=255)

                                     ctTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACGCCTTCATTTaa                                                       <  2:2428683/91‑1 (MQ=255)

                                     ctTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTaa                                                       >  1:2020753/1‑91 (MQ=255)

                                     ctTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTaa                                                       >  1:2021339/1‑91 (MQ=255)

                                       tttAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAAc                                                     <  2:2825126/91‑1 (MQ=255)

                                            attattTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAAc                                                <  1:2535234/91‑1 (MQ=255)

                                               atttattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCa                                             >  1:57967/1‑91 (MQ=255)

                                               atttattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCa                                             >  2:248489/1‑91 (MQ=255)

                                               atttattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCa                                             >  2:2630860/1‑91 (MQ=255)

                                               atttattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCa                                             <  2:2368722/91‑1 (MQ=255)

                                               atttattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCa                                             >  2:1844453/1‑91 (MQ=255)

                                                tttattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCaa                                            >  1:1265865/1‑91 (MQ=255)

                                                 ttattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAg                                           >  2:2081465/1‑91 (MQ=255)

                                                 ttattGTTTGACCAAAGACACTTTCAATAGAATGGTCAAACGTCTTTTTGAACCTACTACTACTCACGCCTTCATTTAACCGCAACCCAAg                                           >  2:2955074/1‑91 (MQ=255)

                                                    ttGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGaaa                                        >  1:1507286/1‑91 (MQ=255)

                                                    ttGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGaaa                                        >  1:1536169/1‑91 (MQ=255)

                                                     tGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAAc                                       <  1:2303421/91‑1 (MQ=255)

                                                     tGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAAc                                       <  2:3320025/91‑1 (MQ=255)

                                                      GTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACa                                      >  2:2572819‑M1/1‑91 (MQ=255)

                                                      GTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACa                                      <  2:432268‑M1/91‑1 (MQ=255)

                                                        ttgaccaatctattgaaagtgtctttggtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACAtt                                    >  1:2151912‑M2/35‑91 (MQ=255)

                                                         tgaccaatctattgaaagtgtctttggtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACAttt                                   >  1:2912090‑M2/34‑91 (MQ=255)

                                                         tgaccaatctattgaaagtgtctttggtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACAttt                                   >  2:117656‑M2/34‑91 (MQ=255)

                                                          GACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttc                                  <  1:592060‑M1/91‑1 (MQ=255)

                                                           accaatttattgaaagtgtctttggtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttct                                 >  1:3015802‑M2/32‑91 (MQ=255)

                                                           accaatctattgaaagtgtctttggtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttct                                 >  2:3470787‑M2/32‑91 (MQ=255)

                                                            CCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttctt                                <  2:3149452‑M1/91‑1 (MQ=255)

                                                             caatctattgaaagtgtctttggtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttc                               >  1:1500746‑M2/30‑91 (MQ=255)

                                                             CAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttc                               <  2:2004606‑M1/91‑1 (MQ=255)

                                                              AAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttct                              >  1:1895402‑M1/1‑91 (MQ=255)

                                                               AAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttctt                             >  2:560402‑M1/1‑91 (MQ=255)

                                                               AAGACACTTTCAATAGATTGGTCAAACTTCTATTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttctt                             <  2:2964764‑M1/91‑1 (MQ=255)

                                                                aGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttcttc                            >  2:3623976/1‑91 (MQ=255)

                                                                 gACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTcc                           <  2:1699711/91‑1 (MQ=255)

                                                                 gACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTcc                           >  1:991404/1‑91 (MQ=255)

                                                                 gACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTcc                           >  1:1811595/1‑91 (MQ=255)

                                                                 gACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTcc                           >  1:204258/1‑91 (MQ=255)

                                                                 gACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTcc                           <  2:1507312/91‑1 (MQ=255)

                                                                   cacTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCAt                         <  1:3665984/91‑1 (MQ=255)

                                                                   cacTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCAt                         <  2:2769806/91‑1 (MQ=255)

                                                                    acTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCAtt                        >  1:3263760/1‑91 (MQ=255)

                                                                    acTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCAtt                        <  2:3516431/91‑1 (MQ=255)

                                                                    acTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCAtt                        >  2:2864133/1‑91 (MQ=255)

                                                                    acTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACAACTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCAtt                        >  2:3420585/1‑91 (MQ=255)

                                                                     cTTTCAATAGATTGGTCAAACTTCTTTTTGAACctac                                                                             >  1:2369813/1‑37 (MQ=255)

                                                                     cTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATtc                       >  1:1391286/1‑91 (MQ=255)

                                                                      tttCAATAGATTGGCCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATtct                      >  2:3297289/1‑91 (MQ=255)

                                                                           aTAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAg                 <  2:3384204/91‑1 (MQ=255)

                                                                            tAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGt                >  1:1191275/1‑91 (MQ=255)

                                                                            tAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGt                >  2:2250687/1‑91 (MQ=255)

                                                                             aGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTc               >  2:2900488/1‑91 (MQ=255)

                                                                             aGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTc               >  1:372486/1‑91 (MQ=255)

                                                                               aTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCaa             <  2:1929863/91‑1 (MQ=255)

                                                                                 tggtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAaag           <  1:1373677‑M2/82‑1 (MQ=255)

                                                                                  ggtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAaaga          <  2:839648‑M2/83‑1 (MQ=255)

                                                                                   gtcaaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAaagaa         <  2:1701466‑M2/84‑1 (MQ=255)

                                                                                     caaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAgg       <  1:514601‑M2/86‑1 (MQ=255)

                                                                                     caaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAgg       <  1:3831400‑M2/86‑1 (MQ=255)

                                                                                      aaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGt      >  2:304214‑M2/5‑91 (MQ=255)

                                                                                      aaacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGt      >  1:2873752‑M2/5‑91 (MQ=255)

                                                                                       aacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGtt     <  1:3192359‑M2/88‑1 (MQ=255)

                                                                                       aacTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGtt     <  1:2171272‑M2/88‑1 (MQ=255)

                                                                                        acTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGttt    >  2:772844‑M2/3‑91 (MQ=255)

                                                                                          ttcttTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTTTAt  >  1:106231/1‑91 (MQ=255)

                                                                                          ttcttTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTTTAt  >  1:1008986/1‑91 (MQ=255)

GCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAAAGAAGGTTTAT  >  USA300TCH1516_ALE/1693701‑1693881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.