| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1695186 | 163 (0.860) | 21 (0.120) | 13/142 | NT | 11.7% | intergenic (‑392/+138) | hemN_1/lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 |
| ? | USA300TCH1516_ALE | 1873591 = | 173 (1.020) | intergenic (‑267/+483) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein | |||||
CTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1695088‑1695186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggg‑‑‑‑ccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAA > USA300TCH1516_ALE/1873591‑1873679 CTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCACCTTGCACACTCTAGTAAGCTGCCTCTTCGTCCGCTTCTGTGTTG > 2:1323988/1‑91 TGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGG < 1:3839463/91‑1 TGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGG < 1:2644125/91‑1 TGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGG < 1:1700088/91‑1 GTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGG < 2:945121/91‑1 GTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGG < 2:1518971/91‑1 TAGAATTTCTTTTCGCAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGAAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG > 1:3314917/1‑91 TAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG < 1:3750428/91‑1 TAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG < 1:1546563/91‑1 TAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG < 1:1546454/91‑1 AGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑C < 1:2098618/91‑1 GAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CC > 2:2931580/1‑91 GAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CC < 1:1800615/91‑1 GAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CC > 1:916787/1‑91 GAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CC < 1:1277821/91‑1 GAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CC < 1:3024820/91‑1 AATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCC < 1:3829141/91‑1 ATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCC < 1:302900/91‑1 ATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCC > 2:1525797/1‑91 TTTCTTTTCGAAATTCTCTATGTTGGGGCGCCGCCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCA < 1:3297492/91‑1 TTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCA < 2:1582721/91‑1 TTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCA < 2:2303184/91‑1 GGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTC > 1:1103592/1‑91 GGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTC > 2:99836/1‑91 GGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTC > 1:1103710/1‑91 GCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCT > 2:538110/1‑91 ACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGg > 1:713784/1‑90 CCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGgc > 1:3284067/1‑89 CCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGgca > 1:3777191/1‑88 CCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGgca > 1:2652209/1‑88 CCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGGCAA > 1:2397103/1‑91 CAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGGCAAT > 2:1183852/1‑91 AACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑AAAAAGAAATTCTACAGACAATG > 1:2211419/1‑91 ACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑AAAAAGAAATTCTACAGACAATGC > 1:3679612/1‑91 CACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑AAAAAGAAATTCTACAGACAATGCAAGTT > 1:3291975/1‑91 ACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCACCCCAACATAGAGAATTTC‑AAAAAGAAATTCTACAGACAATGCAA < 1:2940874/91‑1 ACATTATTGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTG < 2:889385/91‑1 CATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACACAGAGAATTTC‑GAAAAGAAATTCTACAGGCAATGCGAGTTGG < 1:2500142/91‑1 TTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGC < 1:2673325/91‑1 tatcGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCG < 1:3261150/87‑1 atcGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCGG < 1:2681053/88‑1 tcGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCGGG < 2:3692272/89‑1 TGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCGGGGCCCCAAC < 2:3250262/91‑1 GGGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTT < 1:2248482/91‑1 GGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTT < 2:919080/91‑1 GGG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTT > 1:2165298/1‑91 GG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTC > 2:2372352/1‑91 GG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTC > 2:3552263/1‑91 GG‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTC > 2:2372237/1‑91 G‑‑‑‑CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCA < 2:3289968/91‑1 CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAA < 1:3317447/91‑1 CCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATA > 2:2632785/1‑91 CCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATA > 2:2275579/1‑91 CAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAA < 1:592742/91‑1 CAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAA < 1:1515777/91‑1 CAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAA < 1:589299/91‑1 CTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1695088‑1695186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggg‑‑‑‑ccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAA > USA300TCH1516_ALE/1873591‑1873679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |