| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1695186 | 163 (0.860) | 21 (0.120) | 13/142 | NT | 11.7% | intergenic (‑392/+138) | hemN_1/lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 |
| ? | USA300TCH1516_ALE | 1873591 = | 173 (1.020) | intergenic (‑267/+483) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein | |||||
Only 100 of 227 total aligned reads displayed.
AGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAA > USA300TCH1516_ALE/1873505‑1873679 | agagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTTACCGAACGAAAATGCGCCCCGGGGCCCCAACATa > 2:3800141/1‑91 (MQ=255) agCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATaga < 1:3546745/91‑1 (MQ=255) cTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAgaga > 1:3821991/1‑91 (MQ=255) cTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAgaga < 1:1454318/91‑1 (MQ=255) agaTATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAAttt > 1:2761003/1‑91 (MQ=255) agaTATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAAttt > 1:2933183/1‑91 (MQ=255) agaTATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAAttt > 1:233402/1‑91 (MQ=255) atatAAGTCAATGTACTTGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑g > 2:380835/1‑91 (MQ=255) tataAGTCAATGTACTAGGCACACAATTTAATAGTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACAGAGGGAATTTC‑Ga < 2:742630/91‑1 (MQ=255) ataAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑Gaa < 2:356445/91‑1 (MQ=255) ataAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑Gaa < 1:2947753/91‑1 (MQ=255) taAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑Gaaa > 1:93704/1‑91 (MQ=255) taAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑Gaaa > 2:2766489/1‑91 (MQ=255) aaGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑Gaaaa < 1:1393936/91‑1 (MQ=255) aGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAg > 2:2238951/1‑91 (MQ=255) gTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTTACCGAACGAAAATGCGCCCCGGGGCGCCAACATAGAGAATTTC‑GAAAAGa > 2:3596510/1‑91 (MQ=255) cAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGGGAATTTC‑GAAAAGaaa < 2:3075620/91‑1 (MQ=255) cAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGaaa > 1:1975461/1‑91 (MQ=255) ggccccaccccaacttgcacattatagtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTC‑GAAAAGAAATTc > 1:1103710‑M2/66‑91 (MQ=255) gccccaccccaacttgcacattatagtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTC‑GAAAAGAAATTCt > 2:538110‑M2/65‑91 (MQ=255) aCTAGGGACACAATGTAATCGTGACAGTAATTAGCCGAACGATAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTAc < 2:1082124/91‑1 (MQ=25) aCTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTAc > 1:244487/1‑91 (MQ=255) cTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACa > 2:2898450/1‑91 (MQ=255) cTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACa > 2:2578374/1‑91 (MQ=255) cTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACa > 2:636772/1‑91 (MQ=255) aGGCACACAATTTGATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGa < 1:1914577/91‑1 (MQ=255) aGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGa < 1:378294/91‑1 (MQ=255) ggCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGAc > 2:2381319/1‑91 (MQ=255) ggCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAACTCTACAGAc > 2:2265823/1‑91 (MQ=255) ccccaacttgcacattatagtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTC‑GAAAAGAAATTCTAcaggc > 1:3284067‑M2/59‑89 (MQ=255) cacacaATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCAAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACac > 2:3836546/1‑90 (MQ=255) caacttgcacattatagtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGGCAAt > 2:1183852‑M2/56‑91 (MQ=255) cacaATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATg < 1:794305/91‑1 (MQ=255) acaATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGc < 1:34608/91‑1 (MQ=255) acaATTTAATATTGACAGTAATTAAACGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGc > 1:80361/1‑91 (MQ=255) caATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCa > 1:7654/1‑91 (MQ=255) aTTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGTAAg > 2:2294206/1‑91 (MQ=255) tttAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGt > 1:2047201/1‑91 (MQ=255) tttAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGt < 2:763848/91‑1 (MQ=255) tttAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGt < 1:831171/91‑1 (MQ=255) ttAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGtt > 2:620150/1‑91 (MQ=255) acattattgaaagctaactattggccagcttctatgttggggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTg < 2:889385‑M2/44‑1 (MQ=255) cattattgtaagctgacttttcgtcagcttctgtgttggggccccaACACAGAGAATTTC‑GAAAAGAAATTCTACAGGCAATGCGAGTTgg < 1:2500142‑M2/45‑1 (MQ=255) aaTATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTgg > 1:3432701/1‑91 (MQ=255) aaTATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTgg > 1:2910573/1‑91 (MQ=255) atatTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGc < 1:2147767/91‑1 (MQ=255) atatTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGc > 1:2663426/1‑91 (MQ=255) tatcgtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCg < 1:3261150‑M2/48‑1 (MQ=255) ttGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCggg > 1:1052834/1‑91 (MQ=255) atcgtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCgg < 1:2681053‑M2/49‑1 (MQ=255) tcgtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCggg < 2:3692272‑M2/50‑1 (MQ=255) tGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCgggg < 2:2153902/91‑1 (MQ=255) gACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGc > 1:3867129/1‑91 (MQ=255) gACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGc > 1:2211991/1‑91 (MQ=255) aCAGTAATTAACCTAACGAAAATGCGCCCCGGGTCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAAGGCAATTTGGCGGGTcc < 2:2524004/91‑1 (MQ=21) aCAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGcc < 2:71539/91‑1 (MQ=255) aGTAATTAACCGAACGAAAATGCGCCCCGGGGTCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCTAGTTGGCGGGGcccc < 1:3312376/91‑1 (MQ=255) tAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCaa > 1:3374987/1‑91 (MQ=255) tAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCaa < 2:316802/91‑1 (MQ=255) aaTTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAAc < 1:1738193/91‑1 (MQ=255) aaTTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAAc > 1:3690890/1‑91 (MQ=255) tgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCGGGGCCCCAAc < 2:3250262‑M2/58‑1 (MQ=255) ttAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACAt > 1:1157761/1‑91 (MQ=255) tAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATa > 1:2534813/1‑91 (MQ=255) tAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATa < 2:799434/91‑1 (MQ=255) aaCCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAg > 1:255626/1‑91 (MQ=255) aaCCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAg > 2:1786968/1‑91 (MQ=255) aaCCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAg > 2:1797276/1‑91 (MQ=255) aaCCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAg < 2:82061/91‑1 (MQ=255) ccGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGaa > 1:1279195/1‑91 (MQ=255) ccGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGaa > 1:1088007/1‑91 (MQ=255) cgaacgaaAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAg > 2:589299/1‑91 (MQ=255) cgaaAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTgg > 1:403855/1‑91 (MQ=255) gaaAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGGAGCTggt > 1:1935393/1‑90 (MQ=255) gaaAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGc < 1:2381319/91‑1 (MQ=255) aaaaTGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGcc > 1:3628611/1‑91 (MQ=255) aaaTGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCa > 2:1743630/1‑91 (MQ=255) aaaTGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCa > 2:1117818/1‑91 (MQ=255) aaaTGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCa > 1:2682389/1‑91 (MQ=255) aaaTGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCa > 1:3394342/1‑91 (MQ=255) aTGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAAt > 1:1617316/1‑91 (MQ=255) tGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGTCCAATa < 1:3022664/91‑1 (MQ=255) gcgcCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAg > 1:529824/1‑91 (MQ=255) gcgcCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAg < 1:228487/91‑1 (MQ=255) gcCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACCTAGAAGCTGGCCAAGAGtt > 2:1843474/1‑91 (MQ=255) gcCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGtt < 1:3221473/91‑1 (MQ=255) ccccGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTa < 2:1312119/91‑1 (MQ=255) ccccGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTa < 1:26138/91‑1 (MQ=255) cccGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAAGTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAg < 2:1406771/91‑1 (MQ=255) ccGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGc < 2:2937558/91‑1 (MQ=255) ccGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGc > 1:498257/1‑91 (MQ=255) cGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCt < 2:3539505/91‑1 (MQ=255) cGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCt > 2:1444638/1‑91 (MQ=255) ggggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCtt < 1:2248482‑M2/82‑1 (MQ=255) gggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCttt < 2:919080‑M2/83‑1 (MQ=255) gggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCttt > 1:2165298‑M2/9‑91 (MQ=255) ggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTc > 2:2372352‑M2/8‑91 (MQ=255) gccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCa < 2:3289968‑M2/85‑1 (MQ=255) caACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCaataa < 1:1515777‑M2/89‑1 (MQ=255) caACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCaataa < 1:592742‑M2/89‑1 (MQ=255) | AGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAA > USA300TCH1516_ALE/1873505‑1873679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |