| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1695186 | 163 (0.860) | 21 (0.120) | 13/142 | NT | 11.7% | intergenic (‑392/+138) | hemN_1/lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 |
| ? | USA300TCH1516_ALE | 1873591 = | 173 (1.020) | intergenic (‑267/+483) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein | |||||
Only 100 of 215 total aligned reads displayed.
TTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTT > USA300TCH1516_ALE/1695096‑1695276 | tttCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCA < 2:1582721‑M1/91‑1 (MQ=255) tCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAtt > 1:762374/1‑91 (MQ=255) tCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAtt < 2:3116699/91‑1 (MQ=255) cTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTg < 1:1919085/91‑1 (MQ=255) ttttCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGt > 2:1180487/1‑91 (MQ=255) tCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTtat > 2:1889571/1‑91 (MQ=255) gAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATaa > 1:2643906/1‑91 (MQ=255) aaTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGc < 2:895542/91‑1 (MQ=255) aaTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGc < 2:2943126/91‑1 (MQ=255) aaTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGc < 1:287500/91‑1 (MQ=255) ttCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTc < 2:3111654/91‑1 (MQ=255) ttCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTc < 1:1491968/91‑1 (MQ=255) ctctATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCAt > 1:2924009/1‑91 (MQ=255) ctATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCAttt < 1:1681557/91‑1 (MQ=255) tATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCAtttt > 1:1248725/1‑91 (MQ=255) gTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAAc < 1:818545/91‑1 (MQ=255) ggggCCCCACCCCAACTAGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAActct > 1:989511/1‑91 (MQ=255) gggCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTg < 2:2646022/91‑1 (MQ=255) gggCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTg > 2:223378/1‑91 (MQ=255) gggCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTg < 1:507877/91‑1 (MQ=255) ggCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAacatagagaatttcgaaaagaaattc > 1:1103710‑M1/1‑65 (MQ=255) ggCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGt > 1:1654669/1‑91 (MQ=255) ggCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGt < 1:3384993/91‑1 (MQ=255) gCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTc < 1:616145/91‑1 (MQ=255) gCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTc < 1:2220346/91‑1 (MQ=255) gCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTc > 2:1301133/1‑91 (MQ=255) ccccaccccaACTTGGACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑GCCCATTGTTATAAGCTCATTTTAACTCTGTCg > 1:3301864/1‑91 (MQ=255) ccccaccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCg > 1:2149394/1‑91 (MQ=255) cccaccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGa > 1:3803301/1‑91 (MQ=255) caccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATg < 1:223378/91‑1 (MQ=255) caccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATg > 1:1418693/1‑91 (MQ=255) caccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATg > 2:3638746/1‑91 (MQ=255) accccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAacatagagaatttcgaaaagaaattctacagg > 1:713784‑M1/1‑59 (MQ=255) ccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAacatagagaatttcgaaaagaaattctacaggc > 1:3284067‑M1/1‑58 (MQ=255) ccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGc < 1:2853012/91‑1 (MQ=255) ccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAacatagagaatttcgaaaagaaattctacaggcaa > 1:2397103‑M1/1‑56 (MQ=255) ccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTg > 1:2705254/1‑91 (MQ=255) ccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTg < 1:2773473/91‑1 (MQ=255) caACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGc < 1:1098067/91‑1 (MQ=255) aaCTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAacatagagaatttcaaaaagaaattctacagacaatg > 1:2211419‑M1/1‑54 (MQ=255) aCTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAacatagagaatttcaaaaagaaattctacagacaatgc > 1:3679612‑M1/1‑53 (MQ=255) tGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAata < 2:526074/91‑1 (MQ=255) tGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAata < 2:3731483/91‑1 (MQ=255) tGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAata > 1:2177693/1‑91 (MQ=255) tGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGGTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAata < 1:3257335/91‑1 (MQ=255) cacaTTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAacatagagaatttcaaaaagaaattctacagacaatgcaagtt > 1:3291975‑M1/1‑48 (MQ=255) acaTTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCACCCCAacatagagaatttcaaaaagaaattctacagacaatgcaa < 1:2940874‑M1/91‑41 (MQ=255) acaTTATTGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGG‑‑‑‑CCCCAacatagagaatttcgaaaagaaattctacagacaatgcaagttg < 2:889385‑M1/91‑45 (MQ=255) acaTTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATaa < 1:3464514/91‑1 (MQ=255) acaTTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATaa < 2:1854313/91‑1 (MQ=255) ttATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAacatagagaatttcaaaaaagaaattctacaggcaatgcaggttggc < 1:2673325‑M1/91‑48 (MQ=255) ataGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTg > 1:1713685/1‑91 (MQ=255) taGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGt < 2:367232/91‑1 (MQ=255) taGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGt < 1:2380695/91‑1 (MQ=255) aGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTa > 1:2522762/1‑91 (MQ=255) tAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTaaa > 2:3722116/1‑91 (MQ=255) aaGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAg < 2:2149394/91‑1 (MQ=255) aGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGc > 1:106612/1‑91 (MQ=255) aGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGc > 1:3484606/1‑91 (MQ=255) aGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGc < 1:2850375/91‑1 (MQ=255) gCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGcc > 2:271551/1‑91 (MQ=255) cTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGccc > 1:2639812/1‑91 (MQ=255) tGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCAacatagagaatttcaaaaaagaaattctacaggcaatgcaggttggcggggccccaac < 2:3250262‑M1/91‑59 (MQ=255) tGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCa < 1:2256636/91‑1 (MQ=255) aCTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAgg > 2:3369556/1‑91 (MQ=255) cTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGa > 1:364074/1‑91 (MQ=255) ttCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGt < 1:2095200/91‑1 (MQ=255) cGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTa > 1:2725751/1‑91 (MQ=255) tCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAAt > 1:59501/1‑91 (MQ=255) tCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAAt < 2:1444661/91‑1 (MQ=255) tCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAAt > 1:1029771/1‑91 (MQ=255) gCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTa > 1:2894262/1‑91 (MQ=255) gCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGCTAATTTa > 2:3453541/1‑91 (MQ=255) cTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTACCAATATAACATTGTAAAGCCCAGGACGTTAATTTAt > 1:1184038/1‑91 (MQ=255) tgtTGGGG‑‑‑‑CCCCATTGTTATAAGCACATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAgg < 2:1034908/91‑1 (MQ=255) gtTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGc > 2:2577878/1‑91 (MQ=255) ttGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCt < 2:829604/91‑1 (MQ=255) ttGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCt < 2:2771168/91‑1 (MQ=255) tGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCt > 1:2291275/1‑90 (MQ=255) tGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTc < 1:395036/91‑1 (MQ=255) gggg‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTcc < 2:2296475/91‑1 (MQ=255) gggg‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTcc > 2:3315223/1‑91 (MQ=255) gggg‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTcc < 1:1268946/91‑1 (MQ=255) gggg‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTcc > 2:2268486/1‑91 (MQ=255) gggg‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTcc < 1:3343348/91‑1 (MQ=255) gg‑‑‑‑CCCCAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttc > 2:2372237‑M1/1‑7 (MQ=255) gg‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCct < 2:3159418/91‑1 (MQ=255) gg‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCct > 2:3530451/1‑91 (MQ=255) gg‑‑‑‑CCCCACTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCct < 1:1948082/91‑1 (MQ=255) g‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCctc > 2:1790446/1‑91 (MQ=255) g‑‑‑‑CCCCATCGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCctc < 2:3435218/91‑1 (MQ=255) ccccAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttcaa < 1:3317447‑M1/91‑87 (MQ=255) ccAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttcaata > 2:2275579‑M1/1‑3 (MQ=255) ccATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCttt < 1:1859010/91‑1 (MQ=255) ccATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCttt > 2:3401121/1‑91 (MQ=255) ccATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCttt > 1:2627292/1‑91 (MQ=255) ccATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGCTAATTTATCCTAGGCCCCCTCttt > 2:2410423/1‑91 (MQ=255) cAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttcaataa < 1:1515777‑M1/91‑90 (MQ=255) cAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttcaataa < 1:589299‑M1/91‑90 (MQ=255) aTTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCttttt < 2:1263610/91‑1 (MQ=255) | TTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG‑‑‑‑CCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTTT > USA300TCH1516_ALE/1695096‑1695276 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |