| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1721519 = | 196 (1.030) | 19 (0.110) | 14/142 | NT | 10.4% | intergenic (‑236/+49) | USA300HOU_RS08595/USA300HOU_RS08600 | Putative O‑methyltransferase/MSMEI_4947/hypothetical protein |
| ? | USA300TCH1516_ALE | 1721556 = | 155 (0.920) | intergenic (‑273/+12) | USA300HOU_RS08595/USA300HOU_RS08600 | Putative O‑methyltransferase/MSMEI_4947/hypothetical protein | |||||
AAGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1721617‑1721519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACC > USA300TCH1516_ALE/1721556‑1721645 AAGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGG < 1:1405490/91‑1AAGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGG > 2:2222863/1‑91AAGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGG > 1:1100433/1‑91AAGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTATACTCTTGCTAACCTTAAAGATGGGGAGG > 1:3115958/1‑91 AGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAACAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGC > 1:592996/1‑91 AGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGC < 2:758784/91‑1 GAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCA > 2:3325473/1‑91 GAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCA > 1:715086/1‑91 GAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCA > 1:715312/1‑91 GAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCA < 2:47275/91‑1 AATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAA < 2:1180061/91‑1 ATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAG < 1:2344471/91‑1 ATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAG < 1:3218132/91‑1 ATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAG < 1:2344718/91‑1 ATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAG < 2:920962/91‑1 TGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGA < 1:1297754/91‑1 TGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGA < 1:986303/91‑1 TGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGA < 2:1976007/91‑1 GGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAG < 1:700022/91‑1 GGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGT < 2:2142855/91‑1 GGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGT < 1:3607655/91‑1 GACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTA < 2:1565313/91‑1 GACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTA > 2:2656398/1‑91 GACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTA > 1:1789348/1‑91 GACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAACAGTA > 1:3230356/1‑91 AGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAG > 1:3748490/1‑76 AGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAG < 2:3748490/76‑1 AATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAG > 2:3038876/1‑91 AAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTC > 2:2606686/1‑91 AAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTC > 2:2606743/1‑91 TTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAACATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCAT > 1:3370200/1‑91 TTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCAT > 1:1648998/1‑91 TACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTC > 2:861636/1‑91 TACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTC > 2:1546434/1‑91 TCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCA > 2:3641455/1‑91 CTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAT > 2:2225334/1‑91 CTTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAT > 1:2469418/1‑91 TTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATT > 2:1988607/1‑91 TTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATT > 2:981700/1‑91 TTGCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATT < 1:1988607/91‑1 GCTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCT > 1:442466/1‑91 CTAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTT > 1:2473693/1‑91 TAACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTC > 2:3734839/1‑91 AACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCA > 2:62713/1‑91 ACCTTAAAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCAT > 1:311294/1‑91 AAGATGGGGAGGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTT > 2:2997892/1‑91 GCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACT < 2:3820965/91‑1 GCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACT < 2:3821483/91‑1 GCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACT < 1:2026540/91‑1 CAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCGATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTA > 1:516337/1‑91 AAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAA < 1:3005474/91‑1 AGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAAC > 2:3304837/1‑91 AGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGAACTAAC > 1:3201232/1‑91 AGTAAAATCTTTTTAATTATTTTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTT > 2:3685466/1‑91 AGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTACCTT > 1:3495975/1‑91 AGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTT > 2:3034279/1‑91 AGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTT > 1:2873097/1‑91 AGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTT < 2:102000/91‑1 AGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTT > 2:972242/1‑91 AGTAAAATCTTTTTAATTATTCTTCCATTTCAATATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAGCTT > 1:3496130/1‑91 GTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTA > 1:1839083/1‑91 TAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTGCCATTCTTCATCAGTTTCGATTGGTACTCACTTAC > 2:1381040/1‑91 TAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTAC < 2:506339/91‑1 TAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTAC < 2:812360/91‑1 TAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTAC < 2:505745/91‑1 TAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTAC < 1:1882669/91‑1 AAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACC > 2:682375/1‑91 AAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACC < 2:1942760/91‑1 AAGAATGGGACATGATTGAAGAAGTTGTAAATACTGAAATGGAAGAATAATTAAAAAGATTTTACTCTTGCTAACCTTAAAGATGGGGAGGCAAGAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1721617‑1721519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACC > USA300TCH1516_ALE/1721556‑1721645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |