BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1721519 =	196 (1.030)	19 (0.110)	14/142	NT	10.4%	intergenic (‑236/+49)	USA300HOU_RS08595/USA300HOU_RS08600	Putative O‑methyltransferase/MSMEI_4947/hypothetical protein
*	?	USA300TCH1516_ALE	1721556 =	155 (0.920)	19 (0.110)	14/142	NT	10.4%	intergenic (‑273/+12)	USA300HOU_RS08595/USA300HOU_RS08600	Putative O‑methyltransferase/MSMEI_4947/hypothetical protein

Only 100 of 254 total aligned reads displayed.

TTTTCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACCA  >  USA300TCH1516_ALE/1721466‑1721646

ttttCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTaa                                                                                            >  1:2558987/1‑91 (MQ=255)

ttttCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTaa                                                                                            <  1:2002954/91‑1 (MQ=255)

 tttCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTaaa                                                                                           >  2:2298210/1‑91 (MQ=255)

  ttCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTaaaa                                                                                          <  1:2008934/91‑1 (MQ=255)

  atgattgaagaagttgtaaatactgaaatggaagaataattaaaaagatttTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTaaaa                                                                                          >  1:1648998‑M1/52‑91 (MQ=255)

   tCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAAt                                                                                         <  1:3034084/91‑1 (MQ=255)

   tCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAAt                                                                                         >  2:971444/1‑91 (MQ=255)

     aaTAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCt                                                                                       >  1:861734/1‑91 (MQ=255)

     aaTAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCt                                                                                       >  2:3792579/1‑91 (MQ=255)

      aTAAAATTATAAGCGTTAATTATTTATACCTTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCtt                                                                                      <  1:3105464/91‑1 (MQ=255)

      aTAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCtt                                                                                      >  2:1354061/1‑91 (MQ=255)

      aTAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCCCCCCATCTTTAAGGTTAGCAAGAGTAAAATCtt                                                                                      >  1:3183475/1‑91 (MQ=255)

      aTAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCCCCCCATCATTAAGGTTAGCAAGAGTAAAATCtt                                                                                      >  1:3183660/1‑91 (MQ=255)

        gaagaagttgtaaatactgaaatggaagaataattaaaaagatttTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCtttt                                                                                    >  2:2606743‑M1/46‑91 (MQ=255)

        aaaaTTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCtttt                                                                                    <  1:2390891/91‑1 (MQ=255)

         aaaTTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCttttt                                                                                   >  1:2412196/1‑91 (MQ=255)

          aaTTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTa                                                                                  <  1:1425254/91‑1 (MQ=255)

            ttATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAat                                                                                <  2:3268655/91‑1 (MQ=255)

            ttATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAat                                                                                <  1:2058402/91‑1 (MQ=255)

            ttATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAat                                                                                <  2:1760012/91‑1 (MQ=255)

              ataAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAatta                                                                              >  1:2306246/1‑91 (MQ=255)

               taAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAattat                                                                             >  2:2726297/1‑91 (MQ=255)

                aaGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAattatt                                                                            <  1:2108174/91‑1 (MQ=255)

                aaGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAattatt                                                                            >  1:3812149/1‑91 (MQ=255)

                aaGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAattatt                                                                            <  1:3740773/91‑1 (MQ=255)

                aaGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAattatt                                                                            <  1:975198/91‑1 (MQ=255)

                  gCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTAttct                                                                          <  1:1582482/91‑1 (MQ=255)

                  gCGTTAACTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTAttct                                                                          <  1:1930911/91‑1 (MQ=255)

                   cGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTAttctt                                                                         >  2:1248195/1‑91 (MQ=255)

                           atttatAGATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATCTCa                                                                 <  2:3439833/91‑1 (MQ=255)

                           atttatACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCa                                                                 <  2:917847/91‑1 (MQ=255)

                           atttatACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCa                                                                 >  1:3349767/1‑91 (MQ=255)

                            tttatACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAg                                                                <  2:3846907/91‑1 (MQ=255)

                            aatggaagaataattaaaaagattttactcttgctaaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAg                                                                >  2:3038876‑M2/63‑91 (MQ=255)

                              tataCATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTa                                                              >  1:102000/1‑91 (MQ=255)

                               ataCATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTAt                                                             <  1:1423110/91‑1 (MQ=255)

                                  cATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTa                                                          <  1:3216485/91‑1 (MQ=255)

                                  cATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTa                                                          <  1:1758996/91‑1 (MQ=255)

                                  cATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTa                                                          <  2:3525177/91‑1 (MQ=255)

                                  cATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTa                                                          <  1:743818/91‑1 (MQ=255)

                                   aTTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTAc                                                         <  2:1836954/91‑1 (MQ=255)

                                    ttGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACa                                                        >  1:2046340/1‑91 (MQ=255)

                                       cTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAAct                                                     <  2:635243/91‑1 (MQ=255)

                                         tGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAActtc                                                   <  1:2218669/91‑1 (MQ=255)

                                            cTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACttcttc                                                >  2:2076582/1‑91 (MQ=255)

                                            cTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACttcttc                                                >  1:1090904/1‑91 (MQ=255)

                                            cTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACttcttc                                                <  1:3340039/91‑1 (MQ=255)

                                            cTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACttcttc                                                >  1:144597/1‑91 (MQ=255)

                                               aaaaaaTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAAt                                             >  2:2573195/1‑91 (MQ=255)

                                                  ttttactcttgctaaccttaaagatggggaggcaagagtaACATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCAt                                          >  1:3370200‑M2/41‑91 (MQ=255)

                                                  aaaTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCAt                                          <  1:1097893/91‑1 (MQ=255)

                                                    aTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGt                                        >  1:3478931/1‑91 (MQ=255)

                                                    aTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGt                                        >  2:2969770/1‑91 (MQ=255)

                                                    aTACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGt                                        <  2:443984/91‑1 (MQ=255)

                                                     tactcttgctaaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTc                                       >  2:1546434‑M2/38‑91 (MQ=255)

                                                      ACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTcc                                      <  1:3607655‑M1/91‑1 (MQ=255)

                                                      ACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTcc                                      <  2:2142855‑M1/91‑1 (MQ=255)

                                                        tcttgctaaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCa                                    >  2:3641455‑M2/35‑91 (MQ=255)

                                                         cttgctaaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAt                                   >  2:2225334‑M2/34‑91 (MQ=255)

                                                         CTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAt                                   <  1:2344718‑M1/91‑1 (MQ=255)

                                                         CTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAt                                   <  1:3218132‑M1/91‑1 (MQ=255)

                                                          ttgctaaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAtt                                  >  2:1988607‑M2/33‑91 (MQ=255)

                                                           TGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttc                                 >  1:715086‑M1/1‑91 (MQ=255)

                                                           TGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttc                                 <  2:47275‑M1/91‑1 (MQ=255)

                                                            gctaaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttct                                >  1:442466‑M2/31‑91 (MQ=255)

                                                             ctaaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttctt                               >  1:2473693‑M2/30‑91 (MQ=255)

                                                              taaccttaaagatggggaggcaagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttcttc                              >  2:3734839‑M2/29‑91 (MQ=255)

                                                              cTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttcttc                              <  1:1323503/91‑1 (MQ=255)

                                                              cTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCAttcttc                              <  2:12831/91‑1 (MQ=255)

                                                                 cccATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTtcatc                           >  2:2855893/1‑91 (MQ=255)

                                                                   cATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAg                         >  1:249582/1‑91 (MQ=255)

                                                                   cATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAg                         >  1:1826487/1‑91 (MQ=255)

                                                                    aTCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGt                        <  2:1119700/91‑1 (MQ=255)

                                                                    aTCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGt                        <  2:2630216/91‑1 (MQ=255)

                                                                    aTCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGt                        >  1:1120525/1‑91 (MQ=255)

                                                                    aTCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGt                        <  2:511878/91‑1 (MQ=255)

                                                                      cTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGttt                      >  2:1064075/1‑91 (MQ=255)

                                                                      cTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGttt                      <  1:1231785/91‑1 (MQ=255)

                                                                       tttAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTc                     >  1:2659677/1‑91 (MQ=255)

                                                                       tttAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTc                     <  1:831151/91‑1 (MQ=255)

                                                                       tttAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTc                     <  2:604222/91‑1 (MQ=255)

                                                                       tttAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTc                     >  1:1453379/1‑91 (MQ=255)

                                                                        ttAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCg                    <  2:2372360/91‑1 (MQ=255)

                                                                         tAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGa                   >  1:452486/1‑91 (MQ=255)

                                                                          aaGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGAt                  >  2:652355/1‑91 (MQ=255)

                                                                          aaGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATATCAGTATTTAAAACTTCTTCAATCATGTCCCATTCTTAATCAGTTTCGAt                  >  2:3225620/1‑91 (MQ=255)

                                                                           aGGTTAGCATGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGAtt                 <  1:3713032/91‑1 (MQ=255)

                                                                           aGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGAtt                 >  1:1586632/1‑91 (MQ=255)

                                                                             gTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTgg               <  1:2834745/91‑1 (MQ=255)

                                                                              ttAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCACTATTTACAACTTCTTCAATCATGTCCGATTCTTCATCAGTTTCGATTGGt              >  2:3600842/1‑91 (MQ=255)

                                                                                aGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTAc            >  2:818433/1‑91 (MQ=255)

                                                                                  caagagtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCGATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTa          >  1:516337‑M2/9‑91 (MQ=255)

                                                                                      agtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACtt      >  2:3034279‑M2/5‑91 (MQ=255)

                                                                                      agtaAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACtt      >  1:2873097‑M2/5‑91 (MQ=255)

                                                                                      agtaAAATCTTTTTAATTATTCTTCCATTTCAATATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAGCtt      >  1:3496130‑M2/5‑91 (MQ=255)

                                                                                        taAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTGCCATTCTTCATCAGTTTCGATTGGTACTCACTTAc    >  2:1381040‑M2/3‑91 (MQ=255)

                                                                                        taAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTAc    <  2:505745‑M2/89‑1 (MQ=255)

                                                                                         aAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTAcc   <  2:1942760‑M2/90‑1 (MQ=255)

                                                                                          aaaTCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTacca  <  1:680260/91‑1 (MQ=255)

                                                                                          aaaTCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTacca  >  2:713107/1‑91 (MQ=255)

TTTTCAATAAAATTATAAGCGTTAATTATTTATACATTGCTTGACTTAAAAAATACTCTTGCCTCCCCATCTTTAAGGTTAGCAAGAGTAAAATCTTTTTAATTATTCTTCCATTTCAGTATTTACAACTTCTTCAATCATGTCCCATTCTTCATCAGTTTCGATTGGTACTAACTTACCA  >  USA300TCH1516_ALE/1721466‑1721646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.