| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1759667 = | 202 (1.060) | 13 (0.080) | 7/132 | NT | 8.5% | intergenic (‑374/+100) | USA300HOU_RS08780/USA300HOU_RS08785 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1759723 = | 114 (0.730) | intergenic (‑430/+44) | USA300HOU_RS08780/USA300HOU_RS08785 | hypothetical protein/hypothetical protein | |||||
TAATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1759769‑1759667‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAG > USA300TCH1516_ALE/1759723‑1759812 TAATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑AC > 2:2838889/1‑91TAATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑AC > 2:2837876/1‑91TAATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑AC > 2:3100870/1‑91TAATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑AC > 2:2040133/1‑91TAATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑AC > 2:2040023/1‑91 AATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACA > 2:3213843/1‑91 AATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACA < 2:1624554/91‑1 AATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACA > 1:522465/1‑91 ATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACAT > 1:663491/1‑91 ATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACAT > 1:662087/1‑91 ATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACAT > 1:3760910/1‑91 ATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACAT > 1:3459469/1‑91 TAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATT < 1:2202959/91‑1 TAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATT < 2:3866012/91‑1 AGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTA > 1:3249438/1‑91 AGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTA < 2:2928676/91‑1 AGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTA < 2:2928700/91‑1 AGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTA < 2:939415/91‑1 AGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTA > 1:2422509/1‑91 AGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTA < 1:2272332/91‑1 AGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTA < 1:215094/91‑1 TAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGG < 2:2732236/91‑1 TAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGG < 2:469210/91‑1 ATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAG > 2:2944914/1‑91 ATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAG > 2:1239275/1‑91 TCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGT > 2:3321755/1‑91 TCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGT < 1:2849950/91‑1 TCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGT < 2:1514130/91‑1 CTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAGATTCTAAACTAGT‑‑‑ACATTAGGAGTT > 1:3613891/1‑91 CTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTT < 2:3656664/91‑1 actaCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACCCCTAATTTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTT < 2:593202/87‑1 TGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTT > 2:3877081/1‑91 TGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTT > 1:1605310/1‑91 TGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTT < 1:1583956/91‑1 TGTTCATCAAGTAGGATCCGTGCTTGAAAACAAACGAATTCGCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTT < 2:593135/91‑1 GTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTT > 2:2595011/1‑91 GTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTT < 2:1529188/91‑1 GTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTT < 2:2904029/91‑1 GTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTT < 1:2816021/91‑1 GTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTT > 1:481813/1‑91 AAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAAC > 1:2305125/1‑91 AAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAAC > 1:2302933/1‑91 AAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACA > 2:2670328/1‑91 ACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGA > 2:1183710/1‑91 CTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGAT > 2:2536997/1‑91 CTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGAT > 2:2537301/1‑91 CTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGAT > 1:1824588/1‑91 CCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTA > 2:343620/1‑91 CCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTA > 2:343498/1‑91 ATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAT > 2:262749/1‑91 GGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACT > 2:336980/1‑91 GTTAAAAAATTCTAAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACG > 2:2837503/1‑91 GTTAAAAAATTCTAAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACG > 2:2837517/1‑91 ACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCG > 2:487332/1‑91 ACATTAGGAGTTTTAGTTTGTTTTCAAGCACAGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCG < 1:2136830/91‑1 CATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAATAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGT > 1:3871477/1‑91 CATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGTGTTAGATAAAAATCGT > 2:663953/1‑91 CATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGTGTTAGATAAAAATCGT > 2:664015/1‑91 CATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGTGTTAGATAAAAATCGT > 2:663975/1‑91 CATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGT > 1:659595/1‑91 CATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGT < 1:1509715/91‑1 TTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTAT < 1:3237394/91‑1 TTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTAT < 2:632490/91‑1 TAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAAGAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATC < 1:3078865/91‑1 TAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATC > 2:951003/1‑91 TAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATC > 2:2917634/1‑91 TAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATC > 2:1933620/1‑91 AGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCA > 2:2700057/1‑91 AGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCA < 2:2238321/91‑1 AGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCA > 2:3417003/1‑91 GAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGC > 1:2966534/1‑91 GAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGC > 2:153650/1‑91 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG > 1:1294322/1‑91 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG > 1:2370995/1‑91 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG > 1:2371583/1‑91 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG < 1:3148348/91‑1 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG > 1:3240319/1‑91 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG > 1:3241714/1‑91 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG > 2:498981/1‑91 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG < 1:471896/91‑1 AGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCG > 2:255859/1‑91 GTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGC > 1:3143790/1‑91 TTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCG < 2:1873325/91‑1 TTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGT < 2:2211099/91‑1 TTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTA > 1:3347364/1‑91 TTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTA < 1:882758/91‑1 TTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTAATTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTA < 1:3369158/91‑1 TAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAG > 2:1786766/1‑91 TAATAGTAATCTGTTCATCAAGTAGTATCCGTGCTTGAAAACAAACTAAAACTCCTAATGTGGAACTAGTTAAAAAATTCTAAACTAGT‑‑‑ACATTAGGAGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1759769‑1759667‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAG > USA300TCH1516_ALE/1759723‑1759812 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |