BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1759667 =	202 (1.060)	13 (0.080)	7/132	NT	8.5%	intergenic (‑374/+100)	USA300HOU_RS08780/USA300HOU_RS08785	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1759723 =	114 (0.730)	13 (0.080)	7/132	NT	8.5%	intergenic (‑430/+44)	USA300HOU_RS08780/USA300HOU_RS08785	hypothetical protein/hypothetical protein

Only 100 of 241 total aligned reads displayed.

TTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAGC  >  USA300TCH1516_ALE/1759633‑1759813

tttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTCATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTa                                                                                            >  2:3000716/1‑91 (MQ=255)

tttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTa                                                                                            <  1:1755275/91‑1 (MQ=255)

tttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACCAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTa                                                                                            <  2:3594862/91‑1 (MQ=255)

 ttCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAg                                                                                           <  2:3779307/91‑1 (MQ=255)

  tCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgt                                                                                          <  1:788389/91‑1 (MQ=255)

   cAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtt                                                                                         >  1:2242503/1‑91 (MQ=255)

    aaTTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgttt                                                                                        <  1:3482798/91‑1 (MQ=255)

    aaTTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgttt                                                                                        >  2:668180/1‑91 (MQ=255)

     aTTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttg                                                                                       <  1:3042913/91‑1 (MQ=255)

      tttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgt                                                                                      >  2:2480285/1‑91 (MQ=255)

       ttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgtt                                                                                     <  2:2335353/91‑1 (MQ=255)

       ttAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgtt                                                                                     <  2:2712287/91‑1 (MQ=255)

       ttAACAATTAAAGTTATTCTGCATAACAAAACTCCTAATGTACTAGTTGAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgtt                                                                                     <  1:1004866/91‑1 (MQ=255)

        tAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAgtttgttt                                                                                    <  2:335393/91‑1 (MQ=255)

         aaCAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGtttt                                                                                   >  1:1336437/1‑91 (MQ=255)

           cAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCa                                                                                 <  1:2825972/91‑1 (MQ=255)

            aaTTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCaa                                                                                >  1:2860348/1‑91 (MQ=255)

             aTTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAg                                                                               <  1:1839007/91‑1 (MQ=255)

             aTTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAg                                                                               <  1:3292485/91‑1 (MQ=255)

             aTTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAg                                                                               <  2:896518/91‑1 (MQ=255)

             aTTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAg                                                                               <  1:2705219/91‑1 (MQ=255)

              ttAAATTTATTCTGCATAAAAAAACTGCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGCTTGTTTTCAAGc                                                                              >  2:3222025/1‑91 (MQ=255)

                 aaTTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACg                                                                           <  1:341846/91‑1 (MQ=255)

                 aaTCTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACg                                                                           <  1:3125168/91‑1 (MQ=255)

                   tttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGa                                                                         >  2:2866923/1‑91 (MQ=255)

                   tttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGa                                                                         <  2:160812/91‑1 (MQ=255)

                   tttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTCTTAGTTTGTTTTCAAGCACGGa                                                                         >  2:2947435/1‑91 (MQ=255)

                    ttATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAt                                                                        <  1:3386917/91‑1 (MQ=255)

                      aTTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtac                                                                      <  2:1187335/91‑1 (MQ=255)

                      aTTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtac                                                                      >  2:852225/1‑91 (MQ=255)

                       ttCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGAtact                                                                     >  1:946963/1‑91 (MQ=255)

                          tGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATactact                                                                  <  1:1803125/91‑1 (MQ=255)

                           gCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACtt                                                                 <  2:1348655/91‑1 (MQ=255)

                           gCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACtt                                                                 >  2:3753638/1‑91 (MQ=255)

                            cATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtg                                                                <  1:2484865/91‑1 (MQ=255)

                             aTAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtga                                                               <  2:2683329/91‑1 (MQ=255)

                             aTAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtga                                                               >  2:1642645/1‑91 (MQ=255)

                                aCAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtgatga                                                            >  1:1174196/1‑91 (MQ=255)

                                aCAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTtgatga                                                            <  2:2257263/91‑1 (MQ=255)

                                  aaaactcctaatgtggaactagttaaaaaattctaaactagtacattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAAc                                                          >  1:2305125‑M2/57‑91 (MQ=255)

                                  AAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAAc                                                          <  2:2904029‑M1/91‑1 (MQ=255)

                                  AAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAAc                                                          <  1:2816021‑M1/91‑1 (MQ=255)

                                   AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                                         <  1:1583956‑M1/91‑1 (MQ=255)

                                   AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACa                                                         >  2:3877081‑M1/1‑91 (MQ=255)

                                   AAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCAAATTAGGGGTTTTAGTTTGTTTTCAAGCACGGATACtacttgatgtagt                                                         <  2:593202‑M1/91‑5 (MQ=255)

                                    AACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAg                                                        <  2:3656664‑M1/91‑1 (MQ=255)

                                     ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                                       >  2:3321755‑M1/1‑91 (MQ=255)

                                     ACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGa                                                       <  2:1514130‑M1/91‑1 (MQ=255)

                                      ctcctaatgtggaactagttaaaaaattctaaactagtacattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGat                                                      >  2:2536997‑M2/53‑91 (MQ=255)

                                      ctcctaatgtggaactagttaaaaaattctaaactagtacattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGat                                                      >  1:1824588‑M2/53‑91 (MQ=255)

                                        cctaatgtggaactagttaaaaaattctaaactagtacattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                                    >  2:343498‑M2/51‑91 (MQ=255)

                                        CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                                    <  2:2732236‑M1/91‑1 (MQ=255)

                                        CCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGatta                                                    <  2:469210‑M1/91‑1 (MQ=255)

                                          TAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattact                                                  <  2:2928676‑M1/91‑1 (MQ=255)

                                          TAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattact                                                  <  2:939415‑M1/91‑1 (MQ=255)

                                          TAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattact                                                  <  1:2272332‑M1/91‑1 (MQ=255)

                                          TAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattact                                                  >  1:2422509‑M1/1‑91 (MQ=255)

                                           AATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattacta                                                 <  1:2202959‑M1/91‑1 (MQ=255)

                                            ATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat                                                >  1:3760910‑M1/1‑91 (MQ=255)

                                            ATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactat                                                >  1:663491‑M1/1‑91 (MQ=255)

                                             TGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatt                                               >  1:522465‑M1/1‑91 (MQ=255)

                                              GTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactatta                                              >  2:2040133‑M1/1‑91 (MQ=255)

                                                aCTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGattactattact                                            >  2:3700946/1‑91 (MQ=255)

                                                   aGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTAttacttac                                         >  1:395148/1‑91 (MQ=255)

                                                    gttaaaaaattctaaactagttccacattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACg                                        >  2:2837517‑M2/39‑91 (MQ=255)

                                                       tAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGccc                                     <  1:1235229/91‑1 (MQ=255)

                                                       tAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGGTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGccc                                     <  1:3168331/91‑1 (MQ=255)

                                                        aGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCa                                    >  1:2273739/1‑91 (MQ=255)

                                                          aaTTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCaaa                                  >  2:3059036/1‑91 (MQ=255)

                                                          aaTTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCaaa                                  >  2:2610629/1‑91 (MQ=255)

                                                            ttttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATg                                <  2:515364/91‑1 (MQ=255)

                                                             tttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGc                               >  1:1632254/1‑91 (MQ=255)

                                                              ttttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCa                                    >  1:3776723/1‑85 (MQ=255)

                                                                ttAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGtt                            <  2:3079263/91‑1 (MQ=255)

                                                                   aCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGa                         >  1:1504316/1‑91 (MQ=255)

                                                                   aCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGa                         >  1:108384/1‑91 (MQ=255)

                                                                   aCTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGa                         <  1:3646202/91‑1 (MQ=255)

                                                                    cTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGAt                        <  1:3080597/91‑1 (MQ=255)

                                                                    cTAGTTCCACATTAGGAGTTTTAGCTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGAt                        <  1:1898353/91‑1 (MQ=255)

                                                                     tAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATa                       <  2:2202959/91‑1 (MQ=255)

                                                                       ggaccACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTACATaaa                     >  2:3149960/4‑91 (MQ=255)

                                                                       gTTCCACATTAGGAATTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATaaa                     >  2:3295760/1‑91 (MQ=255)

                                                                        ttCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATaaaa                    >  2:701080/1‑91 (MQ=255)

                                                                        ttCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATaaaa                    <  2:2397553/91‑1 (MQ=255)

                                                                         tCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGACACTACTTGATGAATAGATTACTATTACGTACGCCCAAATGCGTTAGATaaaaa                   >  1:3610624/1‑91 (MQ=255)

                                                                          ccACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAAt                  >  2:771402/1‑91 (MQ=255)

                                                                           cacaTTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATc                 >  2:106282/1‑91 (MQ=255)

                                                                            acattaggagttttAGTTTGTTTTCAAGCACAGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCg                <  1:2136830‑M2/77‑1 (MQ=255)

                                                                             cattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGTGTTAGATAAAAATCGt               >  2:663975‑M2/14‑91 (MQ=255)

                                                                             cattaggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGt               >  1:659595‑M2/14‑91 (MQ=255)

                                                                                taggagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATc            >  2:1933620‑M2/11‑91 (MQ=255)

                                                                                   gagttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgc         >  1:2966534‑M2/8‑91 (MQ=255)

                                                                                    agttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgcg        >  2:255859‑M2/7‑91 (MQ=255)

                                                                                    agttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgcg        <  1:471896‑M2/85‑1 (MQ=255)

                                                                                    agttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgcg        >  1:2370995‑M2/7‑91 (MQ=255)

                                                                                    agttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAgcg        >  1:3240319‑M2/7‑91 (MQ=255)

                                                                                      ttttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGcgcg      <  2:1873325‑M2/87‑1 (MQ=255)

                                                                                        ttAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTa    >  1:3347364‑M2/3‑91 (MQ=255)

                                                                                         tAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAg   >  2:1786766‑M2/2‑91 (MQ=255)

                                                                                          aGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAGc  >  2:2770552/1‑91 (MQ=255)

TTTCAATTTAACAATTAAATTTATTCTGCATAACAAAACTCCTAATGTACTAGTTTAGAATTTTTTAACTAGTTCCACATTAGGAGTTTTAGTTTGTTTTCAAGCACGGATACTACTTGATGAACAGATTACTATTACTTACGCCCAAATGCGTTAGATAAAAATCGTATCAGCGCGTAGC  >  USA300TCH1516_ALE/1759633‑1759813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.