| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1822873 | 129 (0.680) | 12 (0.070) | 10/142 | NT | 8.3% | intergenic (+194/+52) | USA300HOU_RS09070/ackA | Putative universal stress protein/Acetate kinase |
| ? | USA300TCH1516_ALE | = 1822899 | 151 (0.890) | intergenic (+220/+26) | USA300HOU_RS09070/ackA | Putative universal stress protein/Acetate kinase | |||||
TAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1822775‑1822873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgtctaTCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAA < USA300TCH1516_ALE/1822899‑1822810 TAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAA < 1:1196350/91‑1TAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAA < 1:1112263/91‑1 AATGTCTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAA < 2:3149816/91‑1 TGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAATAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGC > 2:2560101/1‑91 TGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGC > 2:2588024/1‑91 TGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGC < 2:2930259/91‑1 TGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGC > 2:2588341/1‑91 TGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGC > 2:2593463/1‑91 TGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGC > 2:2593792/1‑91 GTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCG < 2:2407732/91‑1 TTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCCAACAATACAAAAAGCGT > 1:3331009/1‑91 TTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCCAACAATACAAAAAGCGT > 1:3324021/1‑91 TTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGT < 1:1190797/91‑1 TTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGT < 1:3193075/91‑1 TTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGT < 1:1916031/91‑1 TTTCATAATCTTCTTCGTCTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTC < 2:1575695/91‑1 TTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAAAAAAACAAAAAGCGTC < 2:1575655/91‑1 TTCTTAATCTTCTTCGACTACTTAATTCTTTAGGATATTCGTGAAAAGAGATATTACACTAGTTAGTTTTCAAACAATACAAAAAGCGTCT < 2:124828/91‑1 TTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCT < 2:124858/91‑1 TTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCT < 2:124645/91‑1 TTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCT > 1:470942/1‑91 TTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCT < 1:3151652/91‑1 TCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTA < 2:2747327/91‑1 ACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATAT < 1:1378623/91‑1 AATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAG < 2:193278/91‑1 CTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGG > 2:717295/1‑91 TTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTA < 1:2342884/91‑1 TTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTA < 1:2345229/91‑1 TAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAG < 1:2257967/91‑1 AAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGA < 2:2340645/91‑1 TATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCT < 2:3749198/91‑1 CGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTT < 1:717295/91‑1 AAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTG < 1:2315909/91‑1 AAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTG < 1:2315941/91‑1 CAATACAAGAAGCGTCTATCTCCGCTACAATTATATGTAGGTGGTAGACGCTTTTTGTATTGTTGGAAAATTAACTAGTGTAATGTCTCTT < 2:3042660/91‑1 AGCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATA > 2:913696/1‑91 GCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATAT > 1:3062372/1‑91 GCGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATAT > 1:3061671/1‑91 CGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATC > 2:3878342/1‑91 CGTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATC > 2:293084/1‑91 GTCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCT < 1:3721302/91‑1 TCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTT > 1:3183175/1‑91 TCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTT > 1:1248623/1‑91 TCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTT < 2:1098861/91‑1 TCTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTCTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTT > 1:1248505/1‑91 cgATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTA < 2:3534062/89‑1 CTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTA < 1:2859184/91‑1 CTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTA < 1:2858908/91‑1 CTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTA > 2:2917390/1‑91 CTATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTA < 1:2128149/91‑1 TATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAA < 1:2727049/91‑1 TATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAA < 1:1790649/91‑1 TATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAA < 1:2727077/91‑1 TATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAA > 1:2795793/1‑91 ATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAA > 1:1779810/1‑91 ATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAA > 1:1777744/1‑91 ATCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAA > 1:521675/1‑91 TAATGTTTTCATAATCTTCTTCGACTACTTAATTCTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1822775‑1822873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgtctaTCTCCGCTACAATTATATGTAGGAGGTAGACGCTTTTTGTATTGTTTGAAAATTAACTAGTGTAATGTCTCTTTTCACGAATATCTTAAA < USA300TCH1516_ALE/1822899‑1822810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |