BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1822873	129 (0.680)	12 (0.070)	10/142	NT	8.3%	intergenic (+194/+52)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase
*	?	USA300TCH1516_ALE	= 1822899	151 (0.890)	12 (0.070)	10/142	NT	8.3%	intergenic (+220/+26)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase

Only 100 of 211 total aligned reads displayed.

CTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAA  >  USA300TCH1516_ALE/1822809‑1822989

 tttAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAt                                                                                           >  1:521675‑M2/1‑90 (MQ=255)

 tttAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAt                                                                                           >  1:1777744‑M2/1‑90 (MQ=255)

  ttAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAta                                                                                          <  1:2727077‑M2/91‑3 (MQ=255)

  ttAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAta                                                                                          <  1:1790649‑M2/91‑3 (MQ=255)

   tAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtcg                                                                                         <  2:3534062‑M2/91‑4 (MQ=255)

   tAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtag                                                                                         <  1:2858908‑M2/91‑4 (MQ=255)

   tAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtag                                                                                         <  1:2128149‑M2/91‑4 (MQ=255)

    aaGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAGAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtaga                                                                                        >  1:1248505‑M2/1‑87 (MQ=255)

    aaGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtaga                                                                                        <  2:1098861‑M2/91‑5 (MQ=255)

    aaGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtaga                                                                                        >  1:3183175‑M2/1‑87 (MQ=255)

      gATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacg                                                                                      >  2:293084‑M2/1‑85 (MQ=255)

       atatTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgc                                                                                     >  1:3061671‑M2/1‑84 (MQ=255)

        tatTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgct                                                                                    >  2:913696‑M2/1‑83 (MQ=255)

          ttCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTa                                                                                  >  2:1049208/1‑91 (MQ=255)

          ttCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGACAGACGCTTa                                                                                  >  1:3712360/1‑91 (MQ=255)

           tCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTaa                                                                                 >  1:836158/1‑91 (MQ=255)

            cGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAat                                                                                >  2:1472359/1‑91 (MQ=255)

            cGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAat                                                                                <  2:836510/91‑1 (MQ=255)

            cGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAat                                                                                >  2:622187/1‑91 (MQ=255)

              tGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTActat                                                                              >  2:3486008/1‑91 (MQ=255)

               gAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                             >  2:3696936/1‑91 (MQ=255)

                  aaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatttat                                                                          <  1:1091840/91‑1 (MQ=255)

                   agagACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatttatt                                                                         <  2:2377105/91‑1 (MQ=255)

                      gaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaa                                                                      >  2:1715866/1‑91 (MQ=255)

                      gaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaa                                                                      >  1:3515374/1‑91 (MQ=255)

                      gaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaa                                                                      <  2:3185829/91‑1 (MQ=255)

                      gaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaa                                                                      <  2:3778174/91‑1 (MQ=255)

                       aCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaa                                                                     <  1:437417/91‑1 (MQ=255)

                        cATTACACTAGTTAATTTTCAAACAATACAAGAAGCGTCTACCTGCTACATATCATTATAGCGGAGATAGACGCTTAATATTTATTTaaaa                                                                    <  1:3097408/91‑1 (MQ=255)

                        cATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaaa                                                                    >  2:3191591/1‑91 (MQ=255)

                           tACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAatt                                                                 <  2:3142583/91‑1 (MQ=255)

                           tACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAatt                                                                 >  1:652479/1‑91 (MQ=255)

                            acacTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAattc                                                                >  2:191041/1‑90 (MQ=255)

                               cTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTAttt                                                             <  2:3875389/91‑1 (MQ=255)

                                tAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTAtttt                                                            >  2:418911/1‑91 (MQ=255)

                                tAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTAtttt                                                            >  2:419233/1‑91 (MQ=255)

                                  gTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaa                                                          >  1:1282509/1‑91 (MQ=255)

                                   ttAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaaa                                                         <  1:1255253/91‑1 (MQ=255)

                                    tAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAac                                                        <  2:782559/91‑1 (MQ=255)

                                      aTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGGAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacca                                                      <  1:3093388/91‑1 (MQ=255)

                                       ttttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccac                                                     >  2:3309050/1‑91 (MQ=255)

                                       ttttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccac                                                     <  2:1269902/91‑1 (MQ=255)

                                        tttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccacc                                                    >  2:1673026/1‑91 (MQ=255)

                                         ttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCg                                                   >  2:330784/1‑91 (MQ=255)

                                          tCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGa                                                  <  1:2015439/91‑1 (MQ=255)

                                          tCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGa                                                  <  1:1865580/91‑1 (MQ=255)

                                            aaaCAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAAt                                                >  2:1034262/1‑91 (MQ=255)

                                               cAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctctt                                             <  1:2315909‑M2/91‑48 (MQ=255)

                                                aaTACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCa                                            >  1:2489146/1‑91 (MQ=255)

                                                aaTACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCa                                            >  1:2817129/1‑91 (MQ=255)

                                                 aTACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCAt                                           >  1:2676048/1‑91 (MQ=255)

                                                  tACAAAAAGCGTCTACCT‑CTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATaa                                         <  2:2904030/91‑1 (MQ=255)

                                                   aCAAAAAGCGTCTACCTCCTACATATAATCGTAGCGGAGATAGACGCTTCATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATaa                                         >  2:492220/1‑91 (MQ=255)

                                                     aaaaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACa                                       >  1:3388272/1‑91 (MQ=255)

                                                      aaaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACAt                                      >  2:3686530/1‑91 (MQ=255)

                                                         aGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaata                                   <  2:3749198‑M2/91‑58 (MQ=255)

                                                         aGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCAc                                   <  1:1662699/91‑1 (MQ=255)

                                                             tCTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatctt                               <  2:2340645‑M2/91‑62 (MQ=255)

                                                             tCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGc                               <  1:3686530/91‑1 (MQ=255)

                                                             tCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGc                               <  1:3363120/91‑1 (MQ=255)

                                                             tCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGc                               <  2:1219681/91‑1 (MQ=255)

                                                              cTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCa                              >  1:1851339/1‑91 (MQ=255)

                                                              cTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCa                              <  1:2357565/91‑1 (MQ=255)

                                                              cTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCa                              >  2:2632824/1‑91 (MQ=255)

                                                              cTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCa                              >  2:2471978/1‑91 (MQ=255)

                                                               tACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaa                             <  1:2342884‑M2/91‑64 (MQ=255)

                                                               tACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCaa                             >  1:743484/1‑91 (MQ=255)

                                                                aCCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAAt                            <  2:2062723/91‑1 (MQ=255)

                                                                aCCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAAt                            <  2:3777101/91‑1 (MQ=255)

                                                                 cctcctACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaag                           >  2:717295‑M2/1‑26 (MQ=255)

                                                                 cctcctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATc                           <  1:1433354/91‑1 (MQ=255)

                                                                  ctcctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTGAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCa                          <  1:3098878/91‑1 (MQ=255)

                                                                   tcctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCAt                         <  1:1693715/91‑1 (MQ=255)

                                                                     ctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                       >  1:1773711/1‑91 (MQ=255)

                                                                        cATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACttt                    >  2:1996669/1‑91 (MQ=255)

                                                                         atatAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaattaagt                   <  1:1378623‑M2/91‑74 (MQ=255)

                                                                         atatAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttc                   <  2:270517/91‑1 (MQ=255)

                                                                         atatAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttc                   >  2:2421295/1‑91 (MQ=255)

                                                                          tataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttct                  <  2:2781916/91‑1 (MQ=255)

                                                                          tataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttct                  <  1:2588341/91‑1 (MQ=255)

                                                                           ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                 >  1:1844093/1‑91 (MQ=255)

                                                                              aTTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCAt              >  1:2705742/1‑91 (MQ=255)

                                                                              aTTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCAt              >  1:3651591/1‑91 (MQ=255)

                                                                               ttGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAGCCACCGAATGTCATAACATCACGGGCAATCATACATGCTTCATc             <  2:1866600/91‑1 (MQ=255)

                                                                               ttGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATc             <  2:3057205/91‑1 (MQ=255)

                                                                                tGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCt            >  1:1000168/1‑91 (MQ=255)

                                                                                tGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCt            <  1:330784/91‑1 (MQ=255)

                                                                                tGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCt            >  1:3024646/1‑91 (MQ=255)

                                                                                 gTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTg           >  1:1307935/1‑91 (MQ=255)

                                                                                 gTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTg           <  2:2205232/91‑1 (MQ=255)

                                                                                  tAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGt          <  2:3725125/91‑1 (MQ=255)

                                                                                  tAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGt          <  2:3027866/91‑1 (MQ=255)

                                                                                  tAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGt          <  1:3191591/91‑1 (MQ=255)

                                                                                     cGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCAAGGGCAATCATACTTTCTTCATCTGTTgg       >  2:2542490/1‑91 (MQ=255)

                                                                                       gagaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGaa     >  2:1361275/1‑91 (MQ=255)

                                                                                       gagaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGaa     >  1:78850/1‑91 (MQ=255)

                                                                                       gagaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGaa     >  1:2180667/1‑91 (MQ=255)

                                                                                         gaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATa   <  2:1938473/91‑1 (MQ=255)

                                                                                          aTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATaa  <  2:812731/91‑1 (MQ=255)

                                                                                          aTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATaa  <  1:2399311/91‑1 (MQ=255)

CTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAA  >  USA300TCH1516_ALE/1822809‑1822989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.