| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1844653 = | 241 (1.260) | 19 (0.110) | 11/142 | NT | 8.7% | intergenic (+50/+153) | mrcA/isdH | Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H |
| ? | USA300TCH1516_ALE | 1844699 = | 186 (1.100) | intergenic (+96/+107) | mrcA/isdH | Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H | |||||
AATTTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1844751‑1844653‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACAT > USA300TCH1516_ALE/1844699‑1844788 AATTTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGGAATTTTCTAATT‑GAAAATAATCTTA > 2:3354495/1‑91AATTTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTA < 2:965855/91‑1AATTTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTA > 2:2692591/1‑91 ATTTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTAC < 2:95369/91‑1 ATTTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTAC < 1:3753942/91‑1 TTTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACT > 1:871517/1‑91 TTTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACT < 2:1806143/91‑1 TTTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACT < 1:530958/91‑1 TTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTG < 1:1932487/91‑1 TATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGC > 1:2199257/1‑91 TATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGC > 1:2226706/1‑91 TATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGC > 2:2336549/1‑91 TATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGC > 1:1690209/1‑91 TATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGC > 1:3495182/1‑91 TATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGC < 1:2054372/91‑1 ATAGACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCT < 1:3009912/91‑1 ATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGGGAAATTTTCTAATT‑GAAAATAATCTTACTGCT < 2:3806448/91‑1 ATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCT > 1:3594389/1‑91 TAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTG > 1:1315606/1‑91 TAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTG > 1:980627/1‑91 AAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGT < 1:1003150/91‑1 AAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTC‑AATTAGAAAAT‑TTCTCACTGCTGTT < 2:1224611/91‑1 TGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGC > 1:585672/1‑81 TGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGC < 2:585672/81‑1 AAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAA > 1:2784757/1‑91 AAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAA > 1:2784194/1‑91 AAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAA > 1:2783005/1‑91 AAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTACAGGAAAGCCATTAAACCAATCAAT > 2:3617724/1‑91 AAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAAT > 1:2431676/1‑91 AAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATA > 1:125673/1‑91 AAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATA > 1:2260507/1‑91 AACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTT > 1:728466/1‑91 AACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTT > 1:2489211/1‑91 ACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTT > 2:2524387/1‑91 CAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAA > 1:1007955/1‑91 CAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAA > 2:2991722/1‑91 CAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAA > 2:2674245/1‑91 CAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAA > 2:2674040/1‑91 AGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAA > 2:827541/1‑91 GTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAAT > 2:621264/1‑91 TGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATT > 1:1909884/1‑91 TTTCTAATT‑GAAAATAATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTT > 2:51232/1‑91 AATCTTACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAA > 2:1517262/1‑91 ACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAA < 1:124785/91‑1 CTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAAT < 1:3839764/91‑1 GCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCA < 2:1659861/91‑1 GCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCA < 1:780105/91‑1 CTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCAT < 2:2363336/91‑1 CTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCAT < 2:2364579/91‑1 CTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCAT < 2:2447104/91‑1 CTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCAT < 2:2446949/91‑1 GTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATAC > 2:300328/1‑91 TTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACA > 1:76026/1‑91 TTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACA > 2:1904213/1‑91 TCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACAT < 2:1854304/91‑1 AATTTATAAACTATTGATTGGTTTAATGGCTTTCCTTTAGAGTAAATAAAAAGAACAGCAGTGAGAAATTTTCTAATT‑GAAAATAATCTTACTGCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1844751‑1844653‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACAT > USA300TCH1516_ALE/1844699‑1844788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |