BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1844653 =	241 (1.260)	19 (0.110)	11/142	NT	8.7%	intergenic (+50/+153)	mrcA/isdH	Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H
*	?	USA300TCH1516_ALE	1844699 =	186 (1.100)	19 (0.110)	11/142	NT	8.7%	intergenic (+96/+107)	mrcA/isdH	Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H

Only 100 of 311 total aligned reads displayed.

ATGATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTT  >  USA300TCH1516_ALE/1844563‑1844744

atGATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTaaaa                                                                                             <  2:2791708/91‑1 (MQ=255)

 tgtatgattaactttgtagacaatgtgaaagcaattaatttataaactattgattggtttaatggctttcctttagagtaaataaaaagaa                                                                                            >  1:76026‑M1/90‑91 (MQ=255)

 tGATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTaaaaa                                                                                            >  2:3472851/1‑91 (MQ=255)

   atatTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAAca                                                                                          <  2:145947/91‑1 (MQ=255)

   atatTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAAca                                                                                          >  2:2182378/1‑91 (MQ=255)

    tatTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAAcag                                                                                         >  1:621490/1‑91 (MQ=255)

    atgattaactttgtagacaatgtgaaagcaattaatttataaactattgattggtttaatggctttcctttagagtaaataaaaagAAcag                                                                                         <  2:2364579‑M1/5‑1 (MQ=255)

     atTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAAcagc                                                                                        >  1:3738252/1‑91 (MQ=255)

        aaaTCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGt                                                                                     >  1:3138425/1‑91 (MQ=255)

        aaaTCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGt                                                                                     <  1:1161215/91‑1 (MQ=255)

            cacaTTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATCAAAAACAGCAGTAAGa                                                                                 >  2:3714459/1‑91 (MQ=255)

             ccaTTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGat                                                                                <  2:3842093/90‑1 (MQ=255)

             acaTTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGat                                                                                <  2:1596578/91‑1 (MQ=255)

              caTTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGatt                                                                               >  2:1225828/1‑91 (MQ=255)

               aTTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGatta                                                                              >  1:2496287/1‑91 (MQ=255)

                 ttGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGattatt                                                                            >  1:1211203/1‑91 (MQ=255)

                  tGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTAttt                                                                           >  2:3000344/1‑91 (MQ=255)

                      aaaTCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCaa                                                                       >  2:1047913/1‑91 (MQ=255)

                      aaaTCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCaa                                                                       <  1:3568866/91‑1 (MQ=255)

                      aaaTCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCaa                                                                       <  2:3748244/91‑1 (MQ=255)

                      aaaTCGAAAAAAGCGCTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAACTATTAAAAACAGCAGTAAGCTTATTTTCaa                                                                       >  2:3868446/1‑91 (MQ=255)

                        aTCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAAtt                                                                     <  1:2058252/91‑1 (MQ=255)

                          cGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAg                                                                   <  2:2715506/91‑1 (MQ=255)

                          cGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAAAAAAAAAAAAAAAAACAGCAGTAAGATTATTTTCAATTAg                                                                   <  2:2418180/91‑1 (MQ=37)

                            aaaaaaGCGTTAATTGATGCTCACTTTTTAAATTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGAGTATTTTCAATTAGaa                                                                 <  1:3308765/91‑1 (MQ=255)

                            aaaaaaGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGaa                                                                 >  1:1306703/1‑91 (MQ=255)

                            aaaaaaGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGaa                                                                 >  1:2747538/1‑91 (MQ=255)

                            aaaaaaGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGaa                                                                 <  1:1725276/91‑1 (MQ=255)

                               aaaGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAAt                                                              >  2:1309392/1‑91 (MQ=255)

                                 aGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAAttt                                                            <  2:2909129/91‑1 (MQ=255)

                                 aGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAAttt                                                            <  1:2542524/91‑1 (MQ=255)

                                  gCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTGAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTtc                                                           <  1:2205598/91‑1 (MQ=255)

                                  gCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTtc                                                           >  2:207232/1‑91 (MQ=255)

                                  gCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTtc                                                           >  1:1436992/1‑91 (MQ=255)

                                   cGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTtct                                                          >  1:1125208/1‑91 (MQ=255)

                                    gTTAATTGATGCTCACTTTTTAAAGTCACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTtctc                                                         >  2:2218428/1‑91 (MQ=255)

                                    gTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTtctc                                                         >  1:476318/1‑91 (MQ=255)

                                     ttAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCa                                                        >  2:3011096/1‑91 (MQ=255)

                                     ttAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCa                                                        <  2:840279/91‑1 (MQ=255)

                                      atttataaactattgattggtttaatggctttcctttagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCAc                                                       >  2:621264‑M1/53‑91 (MQ=255)

                                       aaTTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCAct                                                      <  2:1518026/91‑1 (MQ=255)

                                       aaTTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCAct                                                      <  2:2057506/91‑1 (MQ=255)

                                        ttataaactattgattggtttaatggctttcctttagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCActg                                                     >  1:1007955‑M1/51‑91 (MQ=255)

                                        ttataaactattgattggtttaatggctttcctttagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCActg                                                     >  2:2674040‑M1/51‑91 (MQ=255)

                                         ttGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCActgc                                                    <  1:2933840/91‑1 (MQ=255)

                                           gATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCActgctg                                                  >  1:1921050/1‑91 (MQ=255)

                                            aTGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGt                                                 <  1:1554222/91‑1 (MQ=255)

                                            aTGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGt                                                 <  2:2005484/91‑1 (MQ=255)

                                               cTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCt                                              <  1:1183016/91‑1 (MQ=255)

                                                tattgattggtttaatggctttcctttagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                             >  1:125673‑M1/43‑91 (MQ=255)

                                                tattgattggtttaatggctttcctttagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                             >  1:2260507‑M1/43‑91 (MQ=255)

                                                tCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                             >  2:2551940/1‑91 (MQ=255)

                                                tCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                             >  2:247721/1‑91 (MQ=255)

                                                 cACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCttt                                            >  1:3052612/1‑91 (MQ=255)

                                                 cACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCttt                                            >  2:450540/1‑91 (MQ=255)

                                                 attgattggtttaatggctttcctttagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCttt                                            >  1:2431676‑M1/42‑91 (MQ=255)

                                                 attgattggtttaatggctttcctgtagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCttt                                            >  2:3617724‑M1/42‑91 (MQ=255)

                                                  ttgattggtttaatggctttcctttagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtttt                                           >  1:2784757‑M1/41‑91 (MQ=255)

                                                   cTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGCAAGATTATTTTCAATTAGAAAATTTCTCATTGCTGTTCttttt                                          >  1:3880500/1‑91 (MQ=255)

                                                     ttttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttat                                        <  1:3644644/91‑1 (MQ=255)

                                                      tttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttatt                                       <  1:1595556/91‑1 (MQ=255)

                                                       ttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAACATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttattt                                      >  1:3094330/1‑91 (MQ=255)

                                                        tAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttattta                                     >  2:3264611/1‑91 (MQ=255)

                                                         aaaGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTAc                                    >  2:507335/1‑91 (MQ=255)

                                                           aGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActc                                  >  2:1914155/1‑91 (MQ=255)

                                                           aGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActc                                  >  2:2599387/1‑91 (MQ=255)

                                                            gTAACCACATCAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActct                                 <  1:3708811/91‑1 (MQ=255)

                                                             tAACCACGACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTa                                <  2:3435259/91‑1 (MQ=255)

                                                             tAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTa                                <  1:1633418/91‑1 (MQ=255)

                                                              aaCCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTaa                               <  1:1478471/91‑1 (MQ=255)

                                                              aaCCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTaa                               <  2:2496287/91‑1 (MQ=255)

                                                               aCCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGCAAATTTCTCACTGCTGTTCTTTTTATTTACTCTaaa                              >  2:3502066/1‑91 (MQ=255)

                                                                  acaacaATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGa                           <  2:3524520/91‑1 (MQ=255)

                                                                   caacaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGaa                          >  2:3106795/1‑91 (MQ=255)

                                                                   caacaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGCaa                          >  2:1613683/1‑91 (MQ=255)

                                                                    aacaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGaaa                         <  1:1872200/91‑1 (MQ=255)

                                                                     acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                        <  2:735392/91‑1 (MQ=255)

                                                                     acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                        <  1:845926/91‑1 (MQ=255)

                                                                     acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                        <  1:2224995/91‑1 (MQ=255)

                                                                     acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                        >  1:2865860/1‑91 (MQ=255)

                                                                     acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                        <  2:1338598/91‑1 (MQ=255)

                                                                        aTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCa                     >  1:340889/1‑91 (MQ=255)

                                                                        aTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCa                     >  2:166517/1‑91 (MQ=255)

                                                                         tGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCAt                    <  1:3743976/91‑1 (MQ=255)

                                                                          gAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCAtt                   >  1:71710/1‑91 (MQ=255)

                                                                           aaTCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTa                  >  2:2743541/1‑91 (MQ=255)

                                                                           aaTCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTa                  >  2:1848623/1‑91 (MQ=255)

                                                                            aTCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTaa                 >  2:1317455/1‑91 (MQ=255)

                                                                            aTCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTaa                 <  1:3240065/91‑1 (MQ=255)

                                                                              ccAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAAc               <  2:2411142/91‑1 (MQ=255)

                                                                               cAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAAcc              >  1:2660782/1‑91 (MQ=255)

                                                                                   tatTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatc          >  1:410297/1‑91 (MQ=255)

                                                                                   tatTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatc          <  1:2354032/91‑1 (MQ=255)

                                                                                    atTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatca         >  1:67873/1‑91 (MQ=255)

                                                                                     ttAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatcaa        >  2:1876716/1‑91 (MQ=255)

                                                                                     ttAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatcaa        >  1:1070650/1‑91 (MQ=255)

                                                                                        aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg     >  1:3522728/1‑91 (MQ=255)

                                                                                        aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg     >  1:236730/1‑91 (MQ=255)

                                                                                        aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg     <  1:1981905/91‑1 (MQ=255)

                                                                                         aaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGt    >  2:1772788/1‑91 (MQ=255)

ATGATATTAAATCACATTTGTTAAATCGAAAAAAGCGTTAATTGATGCTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTT  >  USA300TCH1516_ALE/1844563‑1844744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.