BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1844653 =	241 (1.260)	19 (0.110)	11/142	NT	8.7%	intergenic (+50/+153)	mrcA/isdH	Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H
*	?	USA300TCH1516_ALE	1844699 =	186 (1.100)	19 (0.110)	11/142	NT	8.7%	intergenic (+96/+107)	mrcA/isdH	Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H

Only 100 of 278 total aligned reads displayed.

CTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACATA  >  USA300TCH1516_ALE/1844610‑1844789

cTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCt                                                                                           <  1:1183016/91‑1 (MQ=255)

 tattgattggtttaatggctttcctttagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                                                                          >  1:125673‑M1/43‑91 (MQ=255)

 tCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                                                                          <  1:355408/91‑1 (MQ=255)

 tCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                                                                          >  2:2551940/1‑91 (MQ=255)

 tCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtt                                                                                          >  1:2364579/1‑91 (MQ=255)

  cACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCttt                                                                                         >  2:450540/1‑91 (MQ=255)

  attgattggtttaatggctttcctttagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCttt                                                                                         >  1:2431676‑M1/42‑91 (MQ=255)

   ttgattggtttaatggctttcctttagagtaaataaaaagAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCtttt                                                                                        >  1:2784757‑M1/41‑91 (MQ=255)

        ttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACCGCTGTTCTTtttattt                                                                                   >  2:2972056/1‑91 (MQ=255)

        ttAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAACATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttattt                                                                                   >  1:3094330/1‑91 (MQ=255)

         tAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttattta                                                                                  <  1:3203507/91‑1 (MQ=255)

         tAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTtttattta                                                                                  <  2:2391045/91‑1 (MQ=255)

          aaaGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTAc                                                                                 >  2:507335/1‑91 (MQ=255)

            aGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActc                                                                               >  2:2599387/1‑91 (MQ=255)

            aGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActc                                                                               >  2:3526244/1‑91 (MQ=255)

             gTAACCACATCAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActct                                                                              <  1:3708824/91‑1 (MQ=255)

             gTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTActct                                                                              >  1:2702857/1‑91 (MQ=255)

              tAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTa                                                                             <  1:1633418/91‑1 (MQ=255)

               aaCCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTaa                                                                            <  2:2496287/91‑1 (MQ=255)

               aaCCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTaa                                                                            <  1:1478471/91‑1 (MQ=255)

                aCCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTaaa                                                                           >  2:2743708/1‑91 (MQ=255)

                 ccACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAg                                                                          <  1:580379/91‑1 (MQ=255)

                   acaacaATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGa                                                                        >  1:1631613/1‑91 (MQ=255)

                     aacaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGaaa                                                                      <  1:1872200/91‑1 (MQ=255)

                      acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                                                                     <  2:1338598/91‑1 (MQ=255)

                      acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                                                                     >  1:2865860/1‑91 (MQ=255)

                      acaaTGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAg                                                                     <  1:2224995/91‑1 (MQ=255)

                          tGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCAt                                                                 <  2:3010779/91‑1 (MQ=255)

                           gAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCAtt                                                                >  2:3502606/1‑91 (MQ=255)

                           gAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCAtt                                                                >  1:2291232/1‑91 (MQ=255)

                             aTCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTaa                                                              >  2:1317547/1‑91 (MQ=255)

                               ccAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAAc                                                            <  2:2411493/91‑1 (MQ=255)

                                cAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAAcc                                                           >  1:3655609/1‑91 (MQ=255)

                                 aaaTATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACca                                                          <  2:1925955/91‑1 (MQ=255)

                                 aaaTATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACca                                                          <  1:403329/91‑1 (MQ=255)

                                  aaTATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAAccca                                                         <  2:542008/91‑3 (MQ=255)

                                  aaTATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaa                                                         <  1:1225828/91‑1 (MQ=255)

                                   atatTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaat                                                        >  2:2885230/1‑91 (MQ=255)

                                    tatTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatc                                                       <  2:1426689/91‑1 (MQ=255)

                                      ttAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatcaa                                                     >  1:1150912/1‑91 (MQ=255)

                                      aaaagaacagcagtgagaaattttctaattgaaaataatcttactgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatcaa                                                     >  1:2783005‑M2/52‑91 (MQ=255)

                                       tAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatcaat                                                    >  1:1706240/1‑91 (MQ=255)

                                       tAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACcaatcaat                                                    <  2:945993/91‑1 (MQ=255)

                                       aaagaacagcagtgagaaattttctaattgaaaataatcttactgctgttCTTTTTATTTACTCTACAGGAAAGCCATTAAACcaatcaat                                                    >  2:3617724‑M2/51‑91 (MQ=255)

                                        aaaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATa                                                   >  1:1014233/1‑91 (MQ=255)

                                        aaaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATa                                                   >  1:2584692/1‑91 (MQ=255)

                                         aaaaCAGGAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg                                                  <  2:3452939/91‑1 (MQ=255)

                                         aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg                                                  >  1:706489/1‑91 (MQ=255)

                                         aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg                                                  <  2:2009248/91‑1 (MQ=255)

                                         aaaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAg                                                  >  1:3522728/1‑91 (MQ=255)

                                          aaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGt                                                 <  1:2400599/91‑1 (MQ=255)

                                          aaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGt                                                 >  2:1772788/1‑91 (MQ=255)

                                          aaaCAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGt                                                 >  1:2056648/1‑91 (MQ=255)

                                           aacagcagtgagaaattttctaattgaaaataatcttactgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGtt                                                >  1:2489211‑M2/47‑91 (MQ=255)

                                           aacagcagtgagaaattttctaattgaaaataatcttactgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGtt                                                >  1:728466‑M2/47‑91 (MQ=255)

                                            ACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGttt                                               <  1:1003150‑M1/91‑1 (MQ=255)

                                             CAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTta                                              >  1:1315606‑M1/1‑91 (MQ=255)

                                              AGCAGTAAGATTATTTTCAATTAGAAAATTTCCCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtat                                             <  2:3806448‑M1/91‑1 (MQ=255)

                                               GCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtata                                            >  1:2226706‑M1/1‑91 (MQ=255)

                                               GCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtata                                            >  2:2336549‑M1/1‑91 (MQ=255)

                                               GCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtata                                            >  1:3495182‑M1/1‑91 (MQ=255)

                                               GCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTtata                                            >  1:2199257‑M1/1‑91 (MQ=255)

                                                cagtgagaaattttctaattgaaaataatcttactgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATaa                                           >  2:2674245‑M2/42‑91 (MQ=255)

                                                CAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATaa                                           <  1:1932487‑M1/91‑1 (MQ=255)

                                                 AGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATaaa                                          >  1:871517‑M1/1‑91 (MQ=255)

                                                 AGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATaaa                                          <  2:1806143‑M1/91‑1 (MQ=255)

                                                   TAAGATTATTTTCAATTAGAAAATTCCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAAtt                                        >  2:3354495‑M1/1‑91 (MQ=255)

                                                    aaGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaatta                                       <  2:1493763/91‑1 (MQ=255)

                                                    aaGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaatta                                       <  1:1570017/91‑1 (MQ=255)

                                                    aaGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaatta                                       <  2:651143/91‑1 (MQ=255)

                                                     aGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaattaa                                      <  2:3738049/91‑1 (MQ=255)

                                                      gATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAaattaat                                     <  2:1108252/91‑1 (MQ=255)

                                                      aattattATCAAGTAGCAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTCAGCCAATCATTAGTTTATAaagtagt                                     <  2:1035138/90‑3 (MQ=255)

                                                         tattTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGc                                  <  2:2719365/91‑1 (MQ=255)

                                                          attTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCt                                 >  1:3737882/1‑91 (MQ=255)

                                                               cAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTcac                            <  1:3011096/91‑1 (MQ=255)

                                                               cAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTcac                            >  1:2157773/1‑91 (MQ=255)

                                                                   tAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTg                        <  1:3000344/91‑1 (MQ=255)

                                                                    aGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGt                       <  2:313289/91‑1 (MQ=255)

                                                                    aGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGt                       <  1:411336/91‑1 (MQ=255)

                                                                    aGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGt                       >  1:924458/1‑91 (MQ=255)

                                                                     gAAAATTACTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTc                      <  1:1937030/91‑1 (MQ=255)

                                                                     aaaaaTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTc                      <  2:1617839/90‑1 (MQ=255)

                                                                       aaaTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTa                    <  2:1228730/91‑1 (MQ=255)

                                                                        aaTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTAc                   >  1:3853856/1‑91 (MQ=255)

                                                                        aaTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTAc                   <  2:3278983/91‑1 (MQ=255)

                                                                         aTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACa                  <  1:787340/91‑1 (MQ=255)

                                                                         aTTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACa                  <  2:3107106/91‑1 (MQ=255)

                                                                            tctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAg               <  1:3752325/91‑1 (MQ=255)

                                                                            tctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAg               <  2:1188742/91‑1 (MQ=255)

                                                                             ctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGt              >  2:2182934/1‑91 (MQ=255)

                                                                             ctcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGt              >  1:3373957/1‑91 (MQ=255)

                                                                              tcACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGtt             >  1:2658197/1‑91 (MQ=255)

                                                                               cACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTa            >  2:2035405/1‑91 (MQ=255)

                                                                                 ctgctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAAt          <  1:3839764‑M2/83‑1 (MQ=255)

                                                                                    ctgttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATcat       <  2:2447104‑M2/86‑1 (MQ=255)

                                                                                       ttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATcataca    >  2:1904213‑M2/3‑91 (MQ=255)

                                                                                       ttCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATcataca    >  1:76026‑M2/3‑91 (MQ=255)

                                                                                        tCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATcatacat   <  2:1854304‑M2/90‑1 (MQ=255)

                                                                                         cTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATcatacata  >  2:698933/1‑91 (MQ=255)

CTCACTTTTTAAAGTAACCACAACAATGAATCCAAATATTAAAAACAGCAGTAAGATTATTTTCAATTAGAAAATTTCTCACTGCTGTTCTTTTTATTTACTCTAAAGGAAAGCCATTAAACCAATCAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACATA  >  USA300TCH1516_ALE/1844610‑1844789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.