| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1870432 = | 192 (1.010) | 11 (0.060) | 7/150 | NT | 5.7% | coding (82/792 nt) | srkA | Stress response kinase A |
| ? | USA300TCH1516_ALE | 1870465 = | 183 (1.030) | coding (49/792 nt) | srkA | Stress response kinase A | |||||
TGAGGTGGACGAGTTGGAGCAGTTTTATCAATTAGGGTGGACACTTGATTCAGCAGGTGGTGCATCTGGTGAAGCATATATGGCTGAACAAGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1870526‑1870432‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAAT > USA300TCH1516_ALE/1870465‑1870554 TGAGGTGGACGAGTTGGAGCAGTTTTATCAATTAGGGTGGACACTTGATTCAGCAGGTGGTGCATCTGGTGAAGCATATATGGCTGAACAA > 2:835095/1‑91TGAGGTGGACGAGTTGGAGCAGTTTTATCAATTAGGGTGGACACTTGATTCAGCAGGTGGTGCATCTGGTGAAGCATATATGGCTGAACAA > 1:2835470/1‑91 GAGGTGGACGAGTTGGAGCAGTTTTATCAATTAGGGTGGACACTTGATTCAGCAGGTGGTGCATCTGGTGAAGCATATATGGCTGAACAAG > 2:3780364/1‑91 AGGTGGACGAGTTGGAGCAGTTTTATCAATTAGGGTGGACACTTGATTCAGCAGGTGGTGCATCTGGTGAAGCATATATGGCTGAACAAGA < 2:593829/91‑1 AGGTGGACGAGTTGGAGCAGTTTTATCAATTAGGGTGGACACTTGATTCAGCAGGTGGTGCATCTGGTGAAGCATATATGGCTGAACAAGA < 2:1212600/91‑1 GGTGGACGAGTTGGAGCAGTTTTATCAATTAGGGTGGACACTTGATTCAGCAGGTGGTGCATCTGGTGAAGCATATATGGCTGAACAAGAT < 1:2114627/91‑1 GGTGGACGAGTTGGAGCAGTTTTATCAATTACGGTGGACACTTGATTCAGCAGGTGGCGCATCTGGTGAAGCATATATGGCTGAACAAGAT > 1:3448943/1‑91 GTGCATCTGGTGAAGCATATATGGCTGAACAAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTC > 1:1924178/1‑91 CTGGTGAAGCATATATGGCTGAACAAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTC > 1:1328612/1‑91 TGGTGAAGCATATATGGCTGAACAAGATGGACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCA > 2:1661150/1‑91 GTGAAGCATATATGGCTGAACAAGATGCACCACCTGCTGAATCAAGTTTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACT > 1:3882212/1‑91 GTGAAGCATATATGGCTGAACAAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACT > 1:2122618/1‑91 TGAAGCATATATGGCTGAACAAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTT > 1:552623/1‑91 TGAAGCATATATGGCTGAACAAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTT > 2:1216362/1‑91 GAAGCATATATGGCTGAACAAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTT > 2:1363376/1‑91 GAAGCATATATGGCTGAACAAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTT > 2:1160432/1‑91 AAGCATATATGGCTGAACAAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTC > 2:546540/1‑91 AAGCATATATGGCTGAACAAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTC > 2:546468/1‑91 AGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAG < 1:1139240/91‑1 ATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTcaaa > 1:3006746/1‑87 ATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTCGAA > 1:3006581/1‑91 ATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAA > 1:3404381/1‑91 ATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAA > 2:112508/1‑91 ATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAA > 2:3818433/1‑91 ATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAA > 2:1639259/1‑91 ATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAA < 1:2795459/91‑1 TGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTTCACCTCACTTTCAATTAGAAAATGGCTCTAGAAA > 1:641119/1‑91 TGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTTGAAA > 1:810780/1‑91 TGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAA > 1:640362/1‑91 TGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAA > 1:2559065/1‑91 TGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAA > 2:2009224/1‑91 TGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAA > 1:3016241/1‑91 TGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAA < 1:689965/91‑1 GCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAAT < 1:1301383/91‑1 GCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAAT < 1:1301277/91‑1 GCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAAT < 1:392639/91‑1 GCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAAT < 1:3811944/91‑1 TGAGGTGGACGAGTTGGAGCAGTTTTATCAATTAGGGTGGACACTTGATTCAGCAGGTGGTGCATCTGGTGAAGCATATATGGCTGAACAAGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1870526‑1870432‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agatgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAAT > USA300TCH1516_ALE/1870465‑1870554 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |