BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1870432 =	192 (1.010)	11 (0.060)	7/150	NT	5.7%	coding (82/792 nt)	srkA	Stress response kinase A
*	?	USA300TCH1516_ALE	1870465 =	183 (1.030)	11 (0.060)	7/150	NT	5.7%	coding (49/792 nt)	srkA	Stress response kinase A

Only 100 of 240 total aligned reads displayed.

CTGCTGATAATGCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAAT  >  USA300TCH1516_ALE/1870375‑1870554

ctgctgATAATGCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGc                                                                                           <  1:3377330/91‑1 (MQ=255)

 tgctgATAATGCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGca                                                                                          >  2:448612/1‑91 (MQ=255)

 tgctgATAATGCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGca                                                                                          >  1:368773/1‑91 (MQ=255)

    tgATAATGCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGcacca                                                                                       <  1:627024/91‑1 (MQ=255)

     gATAATGCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGcaccac                                                                                      >  1:239605/1‑91 (MQ=255)

      aTAATGCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCaccacc                                                                                     >  1:835095/1‑91 (MQ=255)

      aTAATGCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCaccacc                                                                                     >  1:1728468/1‑91 (MQ=255)

      aTAATGCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCaccacc                                                                                     >  1:482375/1‑91 (MQ=255)

         aTGCCGCAAGAAATGGGTTTGAATTTCGTTTTATAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACctgc                                                                                  <  2:3237551/91‑1 (MQ=255)

           gCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACctgctg                                                                                >  2:3589262/1‑91 (MQ=255)

            ccGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCNATCTTGTTCAGNCATANATGCTTCACCAGATGCACCACCTGCTGa                                                                               >  1:1417593/1‑91 (MQ=255)

            ccGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGa                                                                               >  2:2489319/1‑91 (MQ=255)

            ccGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGa                                                                               >  1:2095923/1‑91 (MQ=255)

             cGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGaa                                                                              <  2:3519331/91‑1 (MQ=255)

              gCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAAt                                                                             <  2:2527834/91‑1 (MQ=255)

               cAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATc                                                                            >  2:1035247/1‑91 (MQ=255)

                aaTAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCa                                                                           <  1:3706057/91‑1 (MQ=255)

                 aTAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCaa                                                                          <  1:810778/91‑1 (MQ=255)

                 aTAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCaa                                                                          >  2:1527943/1‑91 (MQ=255)

                  tAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAg                                                                         >  2:275887/1‑91 (MQ=255)

                  tAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAg                                                                         <  2:2088333/91‑1 (MQ=255)

                     aTGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAgtgt                                                                      >  1:1539127/1‑91 (MQ=255)

                     aTGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAgtgt                                                                      >  2:2720506/1‑91 (MQ=255)

                      tGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTc                                                                     <  2:2807605/91‑1 (MQ=255)

                       ggATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTcc                                                                    >  1:916584/1‑91 (MQ=255)

                        gATTTGAATTTCGTTTTAAAAACAAGTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCa                                                                   <  1:3616977/91‑1 (MQ=255)

                        gATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCa                                                                   >  1:1880526/1‑91 (MQ=255)

                         aTTTGAATTTCGGTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCAc                                                                  <  2:1646168/91‑1 (MQ=255)

                          tttGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCAcc                                                                 >  2:2377307/1‑91 (MQ=255)

                          tttGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCAcc                                                                 >  1:2199758/1‑91 (MQ=255)

                          tttGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCAcc                                                                 <  2:369324/91‑1 (MQ=255)

                             gAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTa                                                              >  2:2708001/1‑91 (MQ=255)

                              aaTTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTaa                                                             >  1:1392254/1‑91 (MQ=255)

                              aaTTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTaa                                                             <  1:2679198/91‑1 (MQ=255)

                               aTTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAAt                                                            <  1:951520/91‑1 (MQ=255)

                               aTTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAAt                                                            >  1:2146326/1‑91 (MQ=255)

                               aTTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAAt                                                            <  2:1624513/91‑1 (MQ=255)

                               aTTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAAt                                                            >  1:3549557/1‑91 (MQ=255)

                                  tCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGa                                                         <  1:3554543/91‑1 (MQ=255)

                                  tCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGa                                                         >  2:3396661/1‑91 (MQ=255)

                                   cGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGAt                                                        <  1:3191772/91‑1 (MQ=255)

                                    gTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACctgct                                                                                 <  2:1912267/65‑1 (MQ=255)

                                    gTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATa                                                       <  2:660601/91‑1 (MQ=255)

                                    gTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATa                                                       <  2:3266362/91‑1 (MQ=255)

                                      tttAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATaaa                                                     >  2:1301562/1‑91 (MQ=255)

                                      tttAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATaaa                                                     >  1:1986288/1‑91 (MQ=255)

                                      tttAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATaaa                                                     >  2:2746736/1‑91 (MQ=255)

                                       ttAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATaaaa                                                    <  1:2663854/91‑1 (MQ=255)

                                       ttAAAAACAACTTTTGTCCATCTTGTTCAGCCATATACGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATaaaa                                                    >  1:1448508/1‑91 (MQ=255)

                                        tAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAAc                                                   <  2:1165699/91‑1 (MQ=255)

                                        tAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAAc                                                   <  2:2897807/91‑1 (MQ=255)

                                         aaaaaCAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACt                                                  >  1:2055469/1‑91 (MQ=255)

                                          aaaaCAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAgtgt                                                                      >  1:2485758/1‑70 (MQ=255)

                                          aaaaCAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTg                                                 <  2:735839/91‑1 (MQ=255)

                                             acaacTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTc                                              >  1:3064889/1‑91 (MQ=255)

                                              caacTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTcc                                             >  2:2826913/1‑91 (MQ=255)

                                              caacTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTcc                                             <  1:2952128/91‑1 (MQ=255)

                                              caacTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTcc                                             <  1:275887/91‑1 (MQ=255)

                                                 cTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAAc                                          >  1:2464382/1‑91 (MQ=255)

                                                  ttttGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCACCt                                         >  1:536297/1‑91 (MQ=255)

                                                  ttttGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACt                                         >  1:2892143/1‑91 (MQ=255)

                                                     tGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGt                                      <  2:188890/91‑1 (MQ=255)

                                                      gtgcatctggtgaagcatatatggctgaacaagatgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTc                                     >  1:1924178‑M2/37‑91 (MQ=255)

                                                       tCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTcc                                    <  1:1888253/91‑1 (MQ=255)

                                                        ccATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCa                                   >  2:2268428/1‑91 (MQ=255)

                                                          ATCTTGTTCAGCCATATATGCTTCACCAGATGCGCCACCTGCTGAATCAAGTGTCCACCGTAATTGATAAAACTGCTCCAACTCGTCCAcc                                 >  1:3448943‑M1/1‑91 (MQ=255)

                                                             tggtgaagcatatatggctgaacaagatgGACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCa                              >  2:1661150‑M2/30‑91 (MQ=255)

                                                             TTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCa                              >  2:835095‑M1/1‑91 (MQ=255)

                                                               gtgaagcatatatggctgaacaagatgCACCACCTGCTGAATCAAGTTTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACt                            >  1:3882212‑M2/28‑91 (MQ=255)

                                                                ttCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACtt                           >  1:2286478/1‑91 (MQ=255)

                                                                tgaagcatatatggctgaacaagatgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACtt                           >  2:1216362‑M2/27‑91 (MQ=255)

                                                                tgaagcatatatggctgaacaagatgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACtt                           >  1:552623‑M2/27‑91 (MQ=255)

                                                                 tCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACttt                          >  1:1913760/1‑91 (MQ=255)

                                                                 gaagcatatatggctgaacaagatgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACttt                          >  2:1363376‑M2/26‑91 (MQ=255)

                                                                  cAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTc                         >  1:3413246/1‑91 (MQ=255)

                                                                  cAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTc                         >  1:325108/1‑91 (MQ=255)

                                                                  aagcatatatggctgaacaagatgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTc                         >  2:546468‑M2/25‑91 (MQ=255)

                                                                   aGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCa                        >  1:100423/1‑91 (MQ=255)

                                                                    gCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCaa                       <  2:2236894/91‑1 (MQ=255)

                                                                    gCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCaa                       <  2:1941488/91‑1 (MQ=255)

                                                                     ccATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAAt                      >  1:3022434/1‑91 (MQ=255)

                                                                         atatGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGa                  <  2:211615/91‑1 (MQ=255)

                                                                          tatGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGaa                 <  2:3560005/91‑1 (MQ=255)

                                                                           atGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCGATTAGaaa                <  2:3285276/91‑1 (MQ=255)

                                                                           atGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTCGaaa                >  1:3231023/1‑91 (MQ=255)

                                                                           atGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGaaa                <  2:3138434/91‑1 (MQ=255)

                                                                            tGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTCATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGaaaa               >  2:2988525/1‑91 (MQ=255)

                                                                            tGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGaaaa               >  2:549097/1‑91 (MQ=255)

                                                                                 cACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGct          >  2:2429702/1‑91 (MQ=255)

                                                                                 cACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGcc          >  2:2430206/1‑90 (MQ=255)

                                                                                   ccAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGctct        >  2:2631944/1‑91 (MQ=255)

                                                                                    cAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTa       >  1:2218398/1‑91 (MQ=255)

                                                                                     agatgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAg      <  1:1139240‑M2/86‑1 (MQ=255)

                                                                                       atgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTCGaa    >  1:3006581‑M2/4‑91 (MQ=255)

                                                                                       atgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGaa    <  1:2795459‑M2/88‑1 (MQ=255)

                                                                                       atgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGaa    >  2:3818433‑M2/4‑91 (MQ=255)

                                                                                        tgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTTCACCTCACTTTCAATTAGAAAATGGCTCTAGaaa   >  1:641119‑M2/3‑91 (MQ=255)

                                                                                        tgCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGaaa   >  1:2559065‑M2/3‑91 (MQ=255)

                                                                                         gCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAAt  <  1:1301383‑M2/90‑1 (MQ=255)

                                                                                         gCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAAt  <  1:392639‑M2/90‑1 (MQ=255)

CTGCTGATAATGCCGCAATAAATGGATTTGAATTTCGTTTTAAAAACAACTTTTGTCCATCTTGTTCAGCCATATATGCTTCACCAGATGCACCACCTGCTGAATCAAGTGTCCACCCTAATTGATAAAACTGCTCCAACTCGTCCACCTCACTTTCAATTAGAAAATGGCTCTAGAAAT  >  USA300TCH1516_ALE/1870375‑1870554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.