| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1928296 | 177 (0.930) | 18 (0.110) | 8/140 | NT | 10.5% | intergenic (‑250/+51) | USA300HOU_RS09565/USA300HOU_RS09575 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1928318 | 151 (0.910) | intergenic (‑272/+29) | USA300HOU_RS09565/USA300HOU_RS09575 | hypothetical protein/hypothetical protein | |||||
TCCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1928197‑1928296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctatgaaGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA < USA300TCH1516_ALE/1928318‑1928229 TCCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAAT > 2:1410055/1‑91TCCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAAT > 1:3423896/1‑91 GCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGC > 1:2565252/1‑91 GCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGC < 1:2985468/91‑1 GCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGC > 1:1154865/1‑91 GCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGC > 2:3798258/1‑91 CTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCT < 1:1410055/91‑1 CTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCT < 1:3666248/91‑1 CTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCT < 1:3666002/91‑1 CTTCATACTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCT < 1:1933740/91‑1 TTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 1:4567/91‑1 TCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTAT < 2:1866237/91‑1 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG < 2:2017098/91‑1 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG > 2:3632034/1‑91 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG < 1:2061866/91‑1 ATATTCATTTTTTTTTATGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGt > 2:2300754/1‑90 ATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGA < 2:1993818/91‑1 TATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA < 1:2038635/91‑1 TCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCGTGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCAT < 2:2000900/91‑1 TTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCC < 2:2383079/91‑1 TTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCC < 1:1758411/91‑1 TTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCC < 1:1599988/91‑1 TATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCA < 1:235951/91‑1 TATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCA < 1:2820354/91‑1 TATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCA < 1:1296760/91‑1 TATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCA < 1:1657880/91‑1 ATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCAT < 2:2415723/91‑1 ATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCAT < 1:2596701/91‑1 ATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCAT < 2:244696/91‑1 ATTTGATTGACGGCTTTCCAATTTTTTACTTCATGCTCTTTTAGAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCAT < 1:3884939/91‑1 TTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATT < 2:504846/91‑1 TTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTT < 1:304577/91‑1 TTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTT < 1:2558866/91‑1 TTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTT < 2:2698916/91‑1 GATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTT < 1:1060854/91‑1 TTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTA < 2:152996/91‑1 TGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATA > 1:1897387/1‑91 TGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATA < 1:2666174/91‑1 GGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAA < 2:240134/91‑1 GGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCAATTTTTTAAAAGAGAATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAA < 2:240135/91‑1 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 1:1038595/91‑1 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 1:137852/91‑1 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 2:2892436/91‑1 ATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGA > 1:3328008/1‑91 ATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGA > 1:3348246/1‑91 ATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGA > 1:3495844/1‑91 ATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGA < 1:890427/91‑1 TGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAA > 2:2218884/1‑91 TGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAA > 2:340814/1‑91 TGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAA < 2:3596251/91‑1 TGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAA < 2:468077/91‑1 GAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAATCCGTCAATCAAATAATTGAAA > 2:2113976/1‑91 AAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAA < 2:359834/91‑1 AGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAATAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA > 1:3359309/1‑91 AGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA < 1:2899324/91‑1 AGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA > 1:2233043/1‑91 AGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA > 1:1999233/1‑91 TCCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1928197‑1928296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctatgaaGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA < USA300TCH1516_ALE/1928318‑1928229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |