| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1945259 | 231 (1.210) | 16 (0.090) | 11/144 | NT | 6.8% | intergenic (‑840/‑124) | splA/USA300HOU_RS09665 | Serine protease SplA/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1945265 | 229 (1.340) | intergenic (‑846/‑118) | splA/USA300HOU_RS09665 | Serine protease SplA/hypothetical protein | |||||
ATTTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1945162‑1945259‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaaatAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTTTG < USA300TCH1516_ALE/1945265‑1945176 ATTTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTT < 1:1904376/91‑1ATTTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTT < 2:1674532/91‑1ATTTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTT > 1:792555/1‑91 TTTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTA < 1:1134202/91‑1 TTTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTA > 2:1301213/1‑91 TTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAA > 1:1090584/1‑91 TTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAA > 1:1090793/1‑91 TTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAA > 2:2109387/1‑91 TTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAA > 2:173447/1‑91 TTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAA < 1:428942/91‑1 TATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAA > 2:3135911/1‑91 TATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAA < 1:1208552/91‑1 TATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAA < 2:2083890/91‑1 TATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAA < 1:2676470/91‑1 ATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAA > 2:961671/1‑91 TCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAA > 1:1958451/1‑91 TCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAA < 1:3197313/91‑1 TCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAA > 2:1191316/1‑91 CTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAA < 1:2593624/91‑1 TACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAAT < 2:441078/91‑1 TACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAAT < 2:2972093/91‑1 TCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑A < 1:398794/91‑1 AAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑AAT < 1:982632/91‑1 TCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑AATTTTTT < 1:1064953/91‑1 CATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑AATTTTTTAAC < 2:1420473/91‑1 CATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑AATTTTTTAAC < 1:223746/91‑1 CATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑AATTTTTTAAC < 1:787161/91‑1 TCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑CATTTTTTAACAT < 1:2976906/91‑1 TCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑AATTTTTTAACAT < 2:70523/91‑1 CAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGCTAAAAAATAGAAT‑AATTTTTTAACATA < 1:255738/91‑1 AACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑AATTTTTTAACATAG < 2:352038/91‑1 CAATCTTTCACATCCAACATTTTTGCTTTAGTTTTTATAATTCAAAACAATAAAACTATGTTAAAAAATAGAAT‑AATTTTTTAACATAGTT < 2:3598591/91‑1 CAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑AATTTTTTAACATAGTT < 2:2416539/91‑1 AATCTTTCACATCCCACATTTTTACTTTAGTTTTTATCATTCAAAACAACAAAACTATGTTAAAAAATAGAAT‑AATTTTTTAACATAGTTT < 2:1153824/91‑1 TTTTACTTTAGTCTTTATAATTCAAAACAACAAAACTATGTTAAAAAATTATTC‑TATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAA > 1:2996382/1‑91 ACAAAACTATGTTAAAAAAT‑TATTCTATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAG > 1:3224806/1‑91 AAACTATGTTAAAAAAT‑TATTCTATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATT > 1:1528702/1‑91 TAAAAAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAG < 1:79235/91‑1 TAAAAAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAG < 2:2281624/91‑1 TAAAAAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAG < 2:2281521/91‑1 TAAAAAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAG < 1:145672/91‑1 AAAAAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGA < 1:3827494/91‑1 AAAAAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGA < 1:1204399/91‑1 AAAAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAA > 2:2617538/1‑91 AAAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATGGTTGATGAGAAT < 1:2985211/91‑1 AAAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATCGTTGATGAGAAT < 1:2985185/91‑1 AAAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATCGTTGATGAGAAT < 1:2984982/91‑1 AAATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATT < 2:154221/91‑1 AATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTT > 1:3656862/1‑91 AATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTT < 1:2083284/91‑1 AATAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTT < 2:1654445/91‑1 TAGAAT‑AGTTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTTTG < 2:618108/91‑1 TAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTTTG > 2:1156971/1‑91 TAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTTTG > 2:3089973/1‑91 TAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTTTG < 1:928449/91‑1 TAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTTTG > 1:2387813/1‑91 TAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTTTG > 2:1545599/1‑91 ATTTATCTACATCTCAAAATTCTCATCAACAATCTTTCACATCCAACATTTTTACTTTAGTTTTTATAATTCAAAACAACAAAACTATGTTAAAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1945162‑1945259‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaaaaatAGAAT‑AATTTTTTAACATAGTTTTGTTGTTTTGAATTATAAAAACTAAAGTAAAAATGTTGGATGTGAAAGATTGTTGATGAGAATTTTG < USA300TCH1516_ALE/1945265‑1945176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |