| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1967716 = | 166 (0.870) | 14 (0.080) | 10/146 | NT | 9.1% | intergenic (+48/+76) | traP/USA300HOU_RS09810 | Signal transduction protein TRAP/hypothetical protein |
| ? | USA300TCH1516_ALE | 1967758 = | 129 (0.740) | intergenic (+90/+34) | traP/USA300HOU_RS09810 | Signal transduction protein TRAP/hypothetical protein | |||||
GAAACATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1967812‑1967716‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCG > USA300TCH1516_ALE/1967758‑1967847 GAAACATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGA > 1:3862142/1‑91 AAACATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGAT < 2:2459373/91‑1 AAACATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGAT > 2:1941190/1‑91 ACATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTA > 1:3849105/1‑91 CATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTAC < 1:665084/91‑1 ATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACA > 1:1211204/1‑91 ATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACA < 2:3075827/91‑1 ATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACA > 1:2356249/1‑91 ATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACA < 1:3418886/91‑1 TTATTACGAGAGTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACAT < 1:3511961/91‑1 CATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAA > 1:3505613/1‑91 TGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTTCAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAAT > 2:3416810/1‑91 AATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTT > 2:904482/1‑91 ATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTT > 1:3084539/1‑91 TGTTGAACGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTC > 1:91199/1‑91 GTTGAACGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCC > 1:1439539/1‑91 GTTGAACGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCC > 2:1561447/1‑91 GTTGAACGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCC > 1:1984524/1‑91 GAACGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGA > 2:1780101/1‑91 AACGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGAT > 1:3586551/1‑91 CGCCAAATGATACGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATA > 1:2323912/1‑91 CGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAT > 1:1645159/1‑91 CGCCAAATGATACGGCGTTC‑AGATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAT > 1:1515559/1‑91 CCAAATGATACGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATATTGTTTCCTGATATT > 2:1219612/1‑91 ATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTC > 2:1539334/1‑91 TTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCT < 1:3833304/91‑1 TTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCT < 1:3832677/91‑1 TTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCT > 1:1534883/1‑91 TACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTA < 1:349991/91‑1 ACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAA > 1:1189129/1‑91 ATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATC < 1:1775813/91‑1 TGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCG > 1:734148/1‑91 TGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCG > 1:1258330/1‑91 TGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCG > 1:3160409/1‑91 TGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCG > 1:3160383/1‑91 TGCACCTGTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTATTCG < 2:3446238/91‑1 GAAACATTATTACGAGACTAAAAAACTTCCATTGGCATGTATGTTGTAAAGGTGCATGTAATGTTGAACGCCAAATGATACGGCGTTC‑AGATTACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1967812‑1967716‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCG > USA300TCH1516_ALE/1967758‑1967847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |