BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1967716 =	166 (0.870)	14 (0.080)	10/146	NT	9.1%	intergenic (+48/+76)	traP/USA300HOU_RS09810	Signal transduction protein TRAP/hypothetical protein
*	?	USA300TCH1516_ALE	1967758 =	129 (0.740)	14 (0.080)	10/146	NT	9.1%	intergenic (+90/+34)	traP/USA300HOU_RS09810	Signal transduction protein TRAP/hypothetical protein

Only 100 of 214 total aligned reads displayed.

TTCAAGTTATTTTGAAAGATATCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAA  >  USA300TCH1516_ALE/1967626‑1967806

cgattagaagtattattaaaaagttgaaatatcaggaaacattattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgca                                                                                             >  1:1258330‑M1/91‑91 (MQ=255)

cgattagaagtattattaaaaagttgaaatatcaggaaacattattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgca                                                                                             >  1:3160409‑M1/91‑91 (MQ=255)

cgaatagaagtattattaaaaagttgaaatatcaggaaacattattacgagactaaaaaacttccattggcatgtatgttgtacaggtgca                                                                                             <  2:3446238‑M1/1‑1 (MQ=255)

 tCAAGTTATTTTGAAAGATATCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAAt                                                                                            <  2:2866262/91‑1 (MQ=255)

 gattagaagtattattaaaaagttgaaatatcaggaaacattattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgcAt                                                                                            <  1:1775813‑M1/2‑1 (MQ=255)

   aaGTTATTTTGAAAGATATCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGt                                                                                          >  1:714454/1‑91 (MQ=255)

    tagaagtattattaaaaagttgaaatatcaggaaacattattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgcATGTa                                                                                         <  1:349991‑M1/5‑1 (MQ=255)

     agaagtattattaaaaagttgaaatatcaggaaacattattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgcATGTaa                                                                                        <  1:3833304‑M1/6‑1 (MQ=255)

      ttATTTTGAAAGATATCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAAt                                                                                       <  1:127592/91‑1 (MQ=255)

       tATTTTGAAAGATATCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATc                                                                                      <  1:1273800/91‑1 (MQ=255)

       tATTTTGAAAGATATCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATc                                                                                      <  2:3602539/91‑1 (MQ=255)

         ttttGAAAGATATCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑g                                                                                   <  2:534564/91‑1 (MQ=255)

          tttGAAAGATATCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑Ga                                                                                  <  1:264300/91‑1 (MQ=255)

                aggtatCTATACCCAATGAACGAATAGATTCGAAGATAACTGCTATTGGTTATGCTGTGAACGTATAGATGCTAATGTAATCT‑GAACGCCg                                                                            <  2:1812292/88‑1 (MQ=255)

                aGATATCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCg                                                                            <  1:2820617/91‑1 (MQ=255)

                  atatCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTa                                                                          <  1:3429547/91‑1 (MQ=255)

                  atatCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTa                                                                          >  2:237616/1‑91 (MQ=255)

                    atCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATc                                                                        >  2:132254/1‑91 (MQ=255)

                    atCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGAAGCTAATGTAATCT‑GAACGCCGTATc                                                                        >  2:3832677/1‑91 (MQ=255)

                      cTATAGCCAATAAAAGAATAGATTCGAAGAAAACTTCCAATGGTTATGCTGTTTACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAt                                                                      <  1:3614823/91‑1 (MQ=255)

                      cTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAt                                                                      <  1:1848168/91‑1 (MQ=255)

                      cTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAt                                                                      <  1:2371764/91‑1 (MQ=255)

                      cTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAt                                                                      >  1:905709/1‑91 (MQ=255)

                      cTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAt                                                                      >  2:2121296/1‑91 (MQ=255)

                      cTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCCGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAt                                                                      >  2:3404661/1‑91 (MQ=255)

                       tataCCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAtt                                                                     >  2:717578/1‑91 (MQ=255)

                       tataCCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAtt                                                                     >  2:2753988/1‑91 (MQ=255)

                       tataCCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAtt                                                                     >  2:320969/1‑91 (MQ=255)

                       tataCCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAtt                                                                     >  2:3781510/1‑91 (MQ=255)

                       tataCCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCAtt                                                                     <  2:663428/91‑1 (MQ=255)

                           cccAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGc                                                                 <  1:2553721/91‑1 (MQ=255)

                           cccAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGc                                                                 <  2:1103500/91‑1 (MQ=255)

                           cccAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGc                                                                 <  2:3559256/91‑1 (MQ=255)

                           cccAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGc                                                                 <  1:624750/91‑1 (MQ=255)

                           aatatcaggaaacaatattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgcATGTAATGTTGAACGCCGTATCATTTgg                                                                  >  2:1219612‑M1/64‑91 (MQ=255)

                            ccAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCg                                                                >  2:2613211/1‑91 (MQ=255)

                            ccAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCg                                                                <  2:948827/91‑1 (MQ=255)

                            atatcaggaaacattattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgcATGTAATCT‑GAACGCCGTATCATTTGGCg                                                                >  1:1645159‑M1/63‑91 (MQ=255)

                            atatcaggaaacattattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgcATGTAATCT‑GAACGCCGTATCATTTGGCg                                                                >  1:1515559‑M1/63‑91 (MQ=255)

                             cAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGt                                                               <  1:3103402/91‑1 (MQ=255)

                             cAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGt                                                               <  2:692426/91‑1 (MQ=255)

                               aTAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTc                                                             >  1:3864009/1‑91 (MQ=255)

                               aTAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTc                                                             <  2:2564967/91‑1 (MQ=255)

                                tAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCa                                                            <  1:2977639/91‑1 (MQ=255)

                                tAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCa                                                            <  1:1287009/91‑1 (MQ=255)

                                 aaaaGAATAGATTCGAAGAAAACTGCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCaa                                                           <  2:2180495/91‑1 (MQ=255)

                                  aaaGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAAc                                                          <  2:85255/91‑1 (MQ=255)

                                  aaaGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAAc                                                          <  1:1167587/91‑1 (MQ=255)

                                   gaaacattattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgcATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACa                                                         >  1:91199‑M1/56‑91 (MQ=255)

                                    aaacattattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgcATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACAt                                                        >  1:3084539‑M1/55‑91 (MQ=255)

                                    aGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACAt                                                        >  2:2466538/1‑91 (MQ=255)

                                    aGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACAt                                                        <  1:1750317/91‑1 (MQ=255)

                                    aGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACAt                                                        <  1:1179615/91‑1 (MQ=255)

                                     aacattattacgagactaaaaaacttccattggcatgtatgttgtaaaggtgcATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACAtt                                                       >  2:904482‑M1/54‑91 (MQ=255)

                                       aTAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTAc                                                     >  2:2207728/1‑91 (MQ=255)

                                        tggATGCGAAGAAAACTTCCATTGGGTATGCTGGTAACGGGTAGATGCTAATGTAATCT‑GACCGACGTATCATTTGGCGTTCAACATTACa                                                    <  2:3237718/89‑1 (MQ=255)

                                        tAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACa                                                    <  2:1880072/91‑1 (MQ=255)

                                          gATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATg                                                  <  2:1114281/91‑1 (MQ=255)

                                            ttCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCa                                                >  2:201731/1‑91 (MQ=255)

                                            ttCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCa                                                >  2:2073919/1‑91 (MQ=255)

                                             tCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCAc                                               >  1:247483/1‑91 (MQ=255)

                                             tCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCAc                                               >  2:3514733/1‑91 (MQ=255)

                                              cGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCAcc                                              <  1:1845401/91‑1 (MQ=255)

                                              cGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCAcc                                              >  1:3509752/1‑91 (MQ=255)

                                                   aaaaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTac                                         <  1:3239428/91‑1 (MQ=255)

                                                    aaaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTaca                                        >  2:1542878/1‑91 (MQ=255)

                                                    aaaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTaca                                        >  1:2180234/1‑91 (MQ=255)

                                                    aaaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTaca                                        <  1:877943/91‑1 (MQ=255)

                                                     aaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTacaa                                       <  2:1064298/91‑1 (MQ=255)

                                                        ttCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacat                                    <  1:1139680/91‑1 (MQ=255)

                                                         tCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacata                                   >  2:3757775/1‑91 (MQ=255)

                                                            aTTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacatacat                                >  2:3731163/1‑91 (MQ=255)

                                                            aTTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacatacat                                >  1:1956498/1‑91 (MQ=255)

                                                             ttGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACAGTACATGCACCTTTACAACATACATg                               <  2:2652353/91‑1 (MQ=255)

                                                                 ttATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCaa                           <  1:51789/91‑1 (MQ=255)

                                                                   aTGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATg                         <  2:3302951/91‑1 (MQ=255)

                                                                    tGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTCTCATTTAGCGTTCAACATTACATGCTGCTTTACAACATACATGCCAATgg                        >  2:3611330/1‑91 (MQ=255)

                                                                    tGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATgg                        >  2:717195/1‑91 (MQ=255)

                                                                     gCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGa                       <  1:484056/91‑1 (MQ=255)

                                                                         ttAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtt                   >  1:432083/1‑91 (MQ=255)

                                                                         ttAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtt                   <  1:3793234/91‑1 (MQ=255)

                                                                           aaCGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtttt                 <  2:513676/91‑1 (MQ=255)

                                                                            aCGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGttttt                >  2:3134647/1‑91 (MQ=255)

                                                                            aCGTATAGATGCGAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGttttt                >  1:2995098/1‑91 (MQ=255)

                                                                             cGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtttttt               <  2:2388427/91‑1 (MQ=255)

                                                                               tataGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAg             >  2:1272803/1‑91 (MQ=255)

                                                                                ataGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGt            <  2:1765678/91‑1 (MQ=255)

                                                                                ataGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGt            >  1:3659207/1‑91 (MQ=255)

                                                                                 taGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGtc           <  2:2693853/91‑1 (MQ=255)

                                                                                  aGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGtct          >  1:423077/1‑91 (MQ=255)

                                                                                  aGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGtct          >  2:296278/1‑91 (MQ=255)

                                                                                    aTGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCg        >  2:2430475/1‑91 (MQ=255)

                                                                                     tGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGt       >  2:1118944/1‑91 (MQ=255)

                                                                                     tGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGt       >  2:777786/1‑91 (MQ=255)

                                                                                     tGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGt       >  2:3072684/1‑91 (MQ=255)

                                                                                       cTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaa     <  1:3543649/91‑1 (MQ=255)

                                                                                       cTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaa     >  2:619926/1‑91 (MQ=255)

                                                                                        tAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaat    <  1:2310705/91‑1 (MQ=255)

                                                                                         aaTGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaata   <  1:1542878/91‑1 (MQ=255)

                                                                                         aaTGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaata   >  2:1803534/1‑91 (MQ=255)

TTCAAGTTATTTTGAAAGATATCTATACCCAATAAAAGAATAGATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCT‑GAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAA  >  USA300TCH1516_ALE/1967626‑1967806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.