BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1967716 =	166 (0.870)	14 (0.080)	10/146	NT	9.1%	intergenic (+48/+76)	traP/USA300HOU_RS09810	Signal transduction protein TRAP/hypothetical protein
*	?	USA300TCH1516_ALE	1967758 =	129 (0.740)	14 (0.080)	10/146	NT	9.1%	intergenic (+90/+34)	traP/USA300HOU_RS09810	Signal transduction protein TRAP/hypothetical protein

Only 100 of 195 total aligned reads displayed.

GATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCGT  >  USA300TCH1516_ALE/1967668‑1967848

gATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATg                                                                                            <  2:1114310/91‑1 (MQ=255)

gATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATg                                                                                            <  1:2511550/91‑1 (MQ=255)

gATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATg                                                                                            <  2:3141930/91‑1 (MQ=255)

  ttCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCa                                                                                          <  2:821528/91‑1 (MQ=255)

  ttCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCa                                                                                          >  2:201731/1‑91 (MQ=255)

  ttCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCa                                                                                          <  1:2414581/91‑1 (MQ=255)

  ttCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCa                                                                                          <  2:3115640/91‑1 (MQ=255)

   tCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCAc                                                                                         <  2:695563/91‑1 (MQ=255)

    cGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCAcc                                                                                        >  1:3509752/1‑91 (MQ=255)

    cGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCAcc                                                                                        <  1:1845708/91‑1 (MQ=255)

         aaaaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTac                                                                                   <  1:3239428/91‑1 (MQ=255)

           aaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTacaa                                                                                 <  2:1918625/91‑1 (MQ=255)

           aaCTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTacaa                                                                                 <  2:2588168/91‑1 (MQ=255)

              ttCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacat                                                                              <  1:387652/91‑1 (MQ=255)

              ttCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacat                                                                              <  1:1139680/91‑1 (MQ=255)

               tCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacata                                                                             <  1:3772386/91‑1 (MQ=255)

               tCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacata                                                                             >  2:3757411/1‑91 (MQ=255)

                 cATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGTACCTTTACAacataca                                                                           >  1:1623229/1‑91 (MQ=255)

                  aTTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAacatacat                                                                          >  1:1956498/1‑91 (MQ=255)

                   ttccattggcatgtatgttgtaaaggtgcATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATg                                                                         >  1:3505613‑M1/30‑91 (MQ=255)

                   ttGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACAGTACATGCACCTTTACAACATACATg                                                                         <  2:2652353/91‑1 (MQ=255)

                        tATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAAt                                                                    <  2:327389/91‑1 (MQ=255)

                         aTGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATg                                                                   <  2:3303269/91‑1 (MQ=255)

                         aTGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATg                                                                   <  2:552994/91‑1 (MQ=255)

                          tGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTCTCATTTAGCGTTCAACATTACATGCTGCTTTACAACATACATGCCAATgg                                                                  >  2:3611330/1‑91 (MQ=255)

                          tGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATgg                                                                  >  2:3798582/1‑91 (MQ=255)

                          tGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATgg                                                                  >  2:717230/1‑91 (MQ=255)

                          tGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATgg                                                                  <  2:3512806/91‑1 (MQ=255)

                           gCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGa                                                                 <  1:484056/91‑1 (MQ=255)

                               ttAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtt                                                             >  2:3776219/1‑91 (MQ=255)

                               ttAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtt                                                             <  1:3793234/91‑1 (MQ=255)

                               ttAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtt                                                             >  1:432083/1‑91 (MQ=255)

                                 aaCGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtttt                                                           <  2:1114244/91‑1 (MQ=255)

                                  aCGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGttttt                                                          >  1:3455005/1‑91 (MQ=255)

                                  aCGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGttttt                                                          >  1:2995090/1‑91 (MQ=255)

                                   cGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGtttttt                                                         <  2:2388427/91‑1 (MQ=255)

                                     tataGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAg                                                       <  2:2390608/91‑1 (MQ=255)

                                     tataGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAg                                                       >  2:1272803/1‑91 (MQ=255)

                                      ataGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGt                                                      >  1:3659172/1‑91 (MQ=255)

                                       taGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGtc                                                     <  2:2693853/91‑1 (MQ=255)

                                        aGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGtct                                                    >  2:296278/1‑91 (MQ=255)

                                         gATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGtctc                                                   >  2:2811105/1‑91 (MQ=255)

                                           tGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGt                                                 >  2:777786/1‑91 (MQ=255)

                                           tGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGt                                                 <  2:2119739/91‑1 (MQ=255)

                                           tGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGt                                                 >  2:3072684/1‑91 (MQ=255)

                                           tGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGt                                                 >  2:1118944/1‑91 (MQ=255)

                                             cTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaa                                               <  1:3543649/91‑1 (MQ=255)

                                             cTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaa                                               >  2:1213631/1‑91 (MQ=255)

                                             cTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaa                                               <  1:1533041/91‑1 (MQ=255)

                                              tAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaat                                              <  1:2310705/91‑1 (MQ=255)

                                               aaTGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaata                                             >  2:1803534/1‑91 (MQ=255)

                                               aaTGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGtaata                                             <  1:1542878/91‑1 (MQ=255)

                                                 tgtaatgttgaacgccaaatgatacggcgttcagattacatGCACCTTTTCAACATACATGCCAATGGAAGTTTTTTAGTCTCGTaataat                                           >  2:3416810‑M2/42‑91 (MQ=255)

                                                 TGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTaataat                                           >  1:1211204‑M1/1‑91 (MQ=255)

                                                 TGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTaataat                                           >  1:2356249‑M1/1‑91 (MQ=255)

                                                  GTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATg                                          <  1:665084‑M1/91‑1 (MQ=255)

                                                   TAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGt                                         >  1:3849105‑M1/1‑91 (MQ=255)

                                                    aatgttgaacgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGtt                                        >  2:904482‑M2/39‑91 (MQ=255)

                                                     atgttgaacgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGttt                                       >  1:3084539‑M2/38‑91 (MQ=255)

                                                     ATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGttt                                       <  2:2459373‑M1/91‑1 (MQ=255)

                                                      tgttgaacgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTc                                      >  1:91199‑M2/37‑91 (MQ=255)

                                                       gttgaacgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTcc                                     >  2:1561447‑M2/36‑91 (MQ=255)

                                                       gttgaacgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTcc                                     >  1:1439539‑M2/36‑91 (MQ=255)

                                                       cTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTcc                                     >  2:2354470/1‑91 (MQ=255)

                                                        tGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCt                                    >  2:1775813/1‑91 (MQ=255)

                                                         gAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTg                                   >  1:1997638/1‑91 (MQ=255)

                                                         gAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTg                                   >  2:28762/1‑91 (MQ=255)

                                                          aaCGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGa                                  <  2:714565/91‑1 (MQ=255)

                                                           aCGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGat                                 >  2:985246/1‑91 (MQ=255)

                                                            cGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGata                                <  1:717195/91‑1 (MQ=255)

                                                             gCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGatat                               <  2:656545/91‑1 (MQ=255)

                                                             gCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGatat                               <  2:656798/91‑1 (MQ=255)

                                                             cgccaaatgatacggcgttcagattacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGatat                               >  1:1645159‑M2/30‑91 (MQ=255)

                                                              ccGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAtt                              >  2:2661492/1‑91 (MQ=255)

                                                              ccGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAtt                              >  2:516115/1‑91 (MQ=255)

                                                               cGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATAttt                             >  1:2554341/1‑91 (MQ=255)

                                                                 tATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCa                           <  1:591110/91‑1 (MQ=255)

                                                                 tATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCa                           >  2:1312417/1‑91 (MQ=255)

                                                                 tATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATACTTCa                           <  1:2771020/91‑1 (MQ=255)

                                                                   tCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAAc                         >  2:351746/1‑91 (MQ=255)

                                                                     aTTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACtt                       <  1:1167613/91‑1 (MQ=255)

                                                                      tttGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACttt                      <  1:1068458/91‑1 (MQ=255)

                                                                       ttGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACtttt                     >  2:2284434/1‑91 (MQ=255)

                                                                         ggCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTta                   <  1:1844464/91‑1 (MQ=255)

                                                                           cGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTtaat                 <  2:2322978/91‑1 (MQ=255)

                                                                           cGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTtaat                 >  2:2588990/1‑91 (MQ=255)

                                                                            gTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTtaata                >  2:358438/1‑91 (MQ=255)

                                                                             ttCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTtaataa               <  1:2250803/91‑1 (MQ=255)

                                                                             ttCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTtaataa               <  1:532277/91‑1 (MQ=255)

                                                                              tCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTaataat              >  1:1278472/1‑91 (MQ=255)

                                                                               cAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAataata             <  1:3594378/91‑1 (MQ=255)

                                                                                 aCATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACt           <  2:1731415/91‑1 (MQ=255)

                                                                                   attacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTc         >  2:1539334‑M2/8‑91 (MQ=255)

                                                                                    ttacatGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCt        <  1:3832677‑M2/85‑1 (MQ=255)

                                                                                        atGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATc    <  1:1775813‑M2/89‑1 (MQ=255)

                                                                                         tGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCg   >  1:1258330‑M2/2‑91 (MQ=255)

                                                                                         tGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCg   >  1:734148‑M2/2‑91 (MQ=255)

                                                                                         tGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCg   >  1:3160409‑M2/2‑91 (MQ=255)

                                                                                         tGCACCTGTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTATTCg   <  2:3446238‑M2/90‑1 (MQ=255)

                                                                                          gCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCGt  >  2:2282238/1‑91 (MQ=255)

GATTCGAAGAAAACTTCCATTGGTTATGCTGTTAACGTATAGATGCTAATGTAATCTGAACGCCGTATCATTTGGCGTTCAACATTACATGCACCTTTACAACATACATGCCAATGGAAGTTTTTTAGTCTCGTAATAATGTTTCCTGATATTTCAACTTTTTAATAATACTTCTAATCGT  >  USA300TCH1516_ALE/1967668‑1967848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.