| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1970888 = | 156 (0.820) | 22 (0.130) | 10/142 | NT | 13.0% | intergenic (+77/‑656) | USA300HOU_RS09825/USA300HOU_RS09830 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1970925 = | 155 (0.920) | intergenic (+114/‑619) | USA300HOU_RS09825/USA300HOU_RS09830 | hypothetical protein/hypothetical protein | |||||
AATCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1970986‑1970888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGAT > USA300TCH1516_ALE/1970925‑1971014 aagCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAAT < 2:1471343/88‑1 ATCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGGGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATG < 2:2026739/91‑1 ATCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAGAAAAGAGATGACAAGAAATATCTAATTTCTAATG < 2:2805399/91‑1 ATCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATG < 2:2805067/91‑1 ATCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATG < 1:1784660/91‑1 ATCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATG < 2:2805147/91‑1 ATCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATG > 1:1099831/1‑91 ATCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATG < 2:2805311/91‑1 TCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCACTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGT > 2:274296/1‑91 CACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTC < 2:3318681/91‑1 CACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTC < 2:3318822/91‑1 CACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTC > 1:737279/1‑91 CTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCAT < 1:3791169/91‑1 CTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCAT < 2:1562374/91‑1 CTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCAT < 2:1561961/91‑1 CTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCAT > 2:1925273/1‑91 CTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCAT > 2:1926369/1‑91 CTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAAAGATGACAAGAAATATCTAATTTCTAATGTCAT > 1:3180931/1‑91 TACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATC < 1:3184292/91‑1 TACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATC > 2:1813043/1‑91 ACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATCT > 2:3542928/1‑91 ACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATCT < 1:339530/91‑1 ACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATCT < 1:854856/91‑1 ACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATCT < 1:855893/91‑1 ACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATCT < 1:2267249/91‑1 ACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATCT < 2:2613322/91‑1 CAAACAATGTCTTCCTATAATTTGTAAACATATGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAACTTCTAATGTCATCTC < 1:3313162/91‑1 AAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTG > 2:2179417/1‑91 AGAGATGACAAGAAATATCTAATTTCTAATGTTATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTT > 2:3807363/1‑91 AGAGATGACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAACACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTT > 1:3082776/1‑91 AGAGATGACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTT > 1:1150094/1‑91 AGAGATGACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTT > 1:3734006/1‑91 AGATGACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGT > 2:2921278/1‑91 AGATGACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGT > 2:2921144/1‑91 AGATGACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGT > 2:2921416/1‑91 GATGACAAGAAATATCTAATTTCT‑‑TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGT > 1:932236/1‑91 GATGACAAGAAATATCTAATTTCT‑‑TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGT > 1:931923/1‑91 ATGACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAt > 2:3855571/1‑90 TGACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGT > 1:2256059/1‑91 TGACAAGAAATATCTAATTTCT‑‑TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGA > 1:712791/1‑91 GACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTG > 2:619092/1‑91 ACAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGA > 1:1520933/1‑91 CAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAT > 1:919674/1‑91 CAAGAAATATCTAATTTCTAATGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAT > 2:2346346/1‑91 AGAAATATCTAATTTCT‑‑TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTC > 2:1588507/1‑91 AGAAATATCTAATTTCT‑‑TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTC > 2:1590435/1‑91 AGAAATATCTAATTTCT‑‑TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTC > 2:1590254/1‑91 AATATCTAATTTCT‑‑TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCT > 2:2130115/1‑91 AATATCTAATTTCT‑‑TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCT > 2:2130087/1‑91 TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTAT > 1:3019250/1‑91 TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTAT < 2:1819085/91‑1 TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTAT > 1:857205/1‑91 TGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTAT < 2:2361733/91‑1 GTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATG > 2:220848/1‑91 GTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATG < 2:3157213/91‑1 TCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGA < 2:1342699/91‑1 TCATCTCTTTTTTAAAACTCAAATGAAC‑TATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAA < 2:1426324/91‑1 ccTCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGca > 2:2104140/3‑89 CATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAA > 1:740190/1‑91 CATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAA > 1:122498/1‑91 ATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAAT < 2:987778/91‑1 CTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTG > 1:1293273/1‑91 CTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGAT < 1:836954/91‑1 AATCACTACAAACAATGTCTTCCTATAATTTGTAAACATAAGTTCATTTGAGTTTTAAAAAAGAGATGACAAGAAATATCTAATTTCTAATGTCATCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1970986‑1970888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGAT > USA300TCH1516_ALE/1970925‑1971014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |