BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1970888 =	156 (0.820)	22 (0.130)	10/142	NT	13.0%	intergenic (+77/‑656)	USA300HOU_RS09825/USA300HOU_RS09830	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1970925 =	155 (0.920)	22 (0.130)	10/142	NT	13.0%	intergenic (+114/‑619)	USA300HOU_RS09825/USA300HOU_RS09830	hypothetical protein/hypothetical protein

Only 100 of 249 total aligned reads displayed.

TATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATT  >  USA300TCH1516_ALE/1970835‑1971015

aaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCATctct                                                                                            >  1:3734006‑M1/54‑91 (MQ=255)

aaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCATctct                                                                                            >  1:1150094‑M1/54‑91 (MQ=255)

aaacaatgtcttcctataatttgtaaacataagttcatttgagtgttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCATctct                                                                                            >  1:3082776‑M1/54‑91 (MQ=255)

 aTTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCtt                                                                                           <  2:10555/91‑1 (MQ=255)

  tttttATTAGTAACAGCATATTTATTTTTTAAGATTAAATGCCAAATATGCGAGATGACATTAGAAATTAGATACTTCTTGTCATCTCttt                                                                                          <  2:2820923/91‑1 (MQ=255)

   caatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCtttt                                                                                         >  2:2179417‑M1/51‑91 (MQ=255)

      tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTGATCTCTTTTTTa                                                                                      >  2:3233231/1‑91 (MQ=255)

      tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTa                                                                                      >  2:3587657/1‑91 (MQ=255)

      tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTa                                                                                      >  1:2222429/1‑91 (MQ=255)

       attaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaa                                                                                     <  2:3429736/91‑1 (MQ=255)

       attaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaa                                                                                     <  2:3061197/91‑1 (MQ=255)

        ttaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaaa                                                                                    >  2:1640415/1‑91 (MQ=255)

         taGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaaaa                                                                                   <  2:2878015/91‑1 (MQ=255)

          aGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAAc                                                                                  <  1:3148/91‑1 (MQ=255)

          aGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAAc                                                                                  <  2:1176334/91‑1 (MQ=255)

           gTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACt                                                                                 <  1:3587957/91‑1 (MQ=255)

            tAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTc                                                                                <  2:33195/91‑1 (MQ=255)

              aCAGCATATTTATTTTTTTAAATTAAATGCCAAATAAACGAGATGACATTAGAATTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCaa                                                                              >  1:873544/1‑91 (MQ=255)

              aCAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCaa                                                                              >  2:744915/1‑91 (MQ=255)

                aGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAAt                                                                            <  2:881720/91‑1 (MQ=255)

                aGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACGCAAAt                                                                            >  2:3142779/1‑91 (MQ=255)

                 gCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATg                                                                           <  1:258105/91‑1 (MQ=255)

                    tatttattTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAAc                                                                        <  1:2463198/91‑1 (MQ=255)

                    tatttattTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAAc                                                                        >  2:3646789/1‑91 (MQ=255)

                    tatttattTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAAc                                                                        >  1:3030929/1‑91 (MQ=255)

                     atttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACt                                                                       >  1:1002561/1‑91 (MQ=255)

                      tttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACtt                                                                      >  2:3005636/1‑91 (MQ=255)

                      tttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACtt                                                                      >  2:1147100/1‑91 (MQ=255)

                         atttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATg                                                                   <  1:894562/91‑1 (MQ=255)

                         atttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATg                                                                   >  1:462587/1‑91 (MQ=255)

                         atttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATg                                                                   >  1:1026556/1‑91 (MQ=255)

                         atttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATg                                                                   <  1:1235088/91‑1 (MQ=255)

                         atttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATg                                                                   <  1:2740077/91‑1 (MQ=255)

                          ttttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGt                                                                  <  2:39516/91‑1 (MQ=255)

                           tttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGtt                                                                 <  2:685415/91‑1 (MQ=255)

                            ttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGttt                                                                <  2:526519/91‑1 (MQ=255)

                            ttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGttt                                                                <  1:846017/91‑1 (MQ=255)

                              ttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTAc                                                              <  1:1421491/91‑1 (MQ=255)

                              ttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTAc                                                              <  2:2517870/91‑1 (MQ=255)

                              ttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTAc                                                              <  1:2143991/91‑1 (MQ=255)

                                 aaaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACaaa                                                           >  2:604813/1‑91 (MQ=255)

                                  aaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAAt                                                          >  1:1713096/1‑91 (MQ=255)

                                  aaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAAt                                                          >  2:1060537/1‑91 (MQ=255)

                                   aTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAAtt                                                         >  1:119234/1‑91 (MQ=255)

                                        aTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAgg                                                    >  1:979704/1‑91 (MQ=255)

                                         tGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGa                                                   >  1:763491/1‑91 (MQ=255)

                                         tGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGa                                                   <  1:1942329/91‑1 (MQ=255)

                                         tGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGa                                                   >  2:3128951/1‑91 (MQ=255)

                                         tGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGa                                                   <  1:160945/91‑1 (MQ=255)

                                          gCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGaa                                                  >  2:1541956/1‑91 (MQ=255)

                                          gCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGaa                                                  <  1:1785876/91‑1 (MQ=255)

                                           ccAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAg                                                 >  1:2900377/1‑91 (MQ=255)

                                               aTAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAt                                             >  1:3180881/1‑91 (MQ=255)

                                                    agagatgacaagaaatatctaatttctaatgttatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgttt                                        >  2:3807363‑M2/39‑91 (MQ=255)

                                                     GAGATGACATTAGAAGTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACATATGTTTACAAATTATAGGAAGACAttgtttg                                       <  1:3313162‑M1/91‑1 (MQ=255)

                                                      agatgacaagaaatatctaatttctaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtttgt                                      >  2:2921144‑M2/37‑91 (MQ=255)

                                                      agatgacaagaaatatctaatttctaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtttgt                                      >  2:2921416‑M2/37‑91 (MQ=255)

                                                      AGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtttgt                                      <  2:2613322‑M1/91‑1 (MQ=255)

                                                      AGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtttgt                                      <  1:2267249‑M1/91‑1 (MQ=255)

                                                      AGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtttgt                                      <  1:339530‑M1/91‑1 (MQ=255)

                                                      AGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgtttgt                                      <  1:854856‑M1/91‑1 (MQ=255)

                                                        ATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAg                                    <  1:3791169‑M1/91‑1 (MQ=255)

                                                        ATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAg                                    <  2:1562374‑M1/91‑1 (MQ=255)

                                                         gatgacaagaaatatctaatttcttgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGt                                   >  1:932236‑M2/34‑91 (MQ=255)

                                                          GACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTg                                  <  2:3318681‑M1/91‑1 (MQ=255)

                                                           tgacaagaaatatctaatttcttgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGa                                 >  1:712791‑M2/32‑91 (MQ=255)

                                                           acaagaaatatctaatttctaatgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGa                                 >  1:1520933‑M2/32‑91 (MQ=255)

                                                           ACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAGTGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGa                                 >  2:274296‑M1/1‑91 (MQ=255)

                                                            CATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt                                <  2:2805067‑M1/91‑1 (MQ=255)

                                                            CATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACCCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt                                <  2:2026739‑M1/91‑1 (MQ=255)

                                                            CATTAGAAATTAGATATTTCTTGTCATCTCTTTTCTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAt                                <  2:2805399‑M1/91‑1 (MQ=255)

                                                               tAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAtttt                             <  1:3443206/91‑1 (MQ=255)

                                                               tAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAtttt                             <  2:3479488/91‑1 (MQ=255)

                                                               tAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGAtttt                             <  2:471991/91‑1 (MQ=255)

                                                                agaaatatctaatttcttgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTc                            >  2:1590435‑M2/27‑91 (MQ=255)

                                                                aGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTc                            >  2:3604486/1‑91 (MQ=255)

                                                                   aatatctaatttcttgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCt                         >  2:2130115‑M2/24‑91 (MQ=255)

                                                                    aTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCtt                        <  2:3180881/91‑1 (MQ=255)

                                                                    aTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCtt                        <  1:1082144/91‑1 (MQ=255)

                                                                    aTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCtt                        >  2:2726570/1‑91 (MQ=255)

                                                                     ttAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTa                       >  2:673230/1‑91 (MQ=255)

                                                                      tAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTaa                      >  1:3593982/1‑91 (MQ=255)

                                                                       aGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTaaa                     >  1:1367675/1‑91 (MQ=255)

                                                                        gATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAAt                    <  2:1928990/91‑1 (MQ=255)

                                                                         atatTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATc                   <  2:290242/91‑1 (MQ=255)

                                                                         atatTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACACTGTTTGTAGTGATTTTCGCTTAAATc                   <  2:2222429/91‑1 (MQ=255)

                                                                            tttCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCata                <  2:1808148/91‑1 (MQ=255)

                                                                            tttCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCata                >  2:1372510/1‑91 (MQ=255)

                                                                               cTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCtt                        <  2:1946835/80‑1 (MQ=255)

                                                                               cTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCtt                        >  1:1946835/1‑80 (MQ=255)

                                                                                ttGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTa            <  1:2662345/91‑1 (MQ=255)

                                                                                ttGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTa            >  1:833200/1‑91 (MQ=255)

                                                                                 tgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTAt           <  2:2361733‑M2/82‑1 (MQ=255)

                                                                                 tgtcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTAt           <  2:1819085‑M2/82‑1 (MQ=255)

                                                                                   tcatctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGa         <  2:1342699‑M2/84‑1 (MQ=255)

                                                                                   tcatctcTTTTTTAAAACTCAAATGAAC‑TATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGaa        <  2:1426324‑M2/84‑1 (MQ=255)

                                                                                    cctctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTatgca        >  2:2104140‑M2/7‑89 (MQ=255)

                                                                                    catctcTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGaa        >  1:740190‑M2/7‑91 (MQ=255)

                                                                                          ttttttAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCGTATTTATGAattgatt  <  2:2410143/91‑1 (MQ=255)

                                                                                          ttttttAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAattgatt  <  1:1286123/91‑1 (MQ=255)

TATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTGTAGTGATTTTCGCTTAAATCATATTTATGAATTGATT  >  USA300TCH1516_ALE/1970835‑1971015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.