| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1970888 = | 156 (0.820) | 22 (0.130) | 10/142 | NT | 13.0% | intergenic (+77/‑656) | USA300HOU_RS09825/USA300HOU_RS09830 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1970925 = | 155 (0.920) | intergenic (+114/‑619) | USA300HOU_RS09825/USA300HOU_RS09830 | hypothetical protein/hypothetical protein | |||||
Only 100 of 291 total aligned reads displayed.
AAATTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTG > USA300TCH1516_ALE/1970798‑1970978 | atcaattcataaatatgatttaagcgaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaag < 1:836954‑M1/1‑1 (MQ=255)aaaTTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACG < 1:3060984‑M1/91‑1 (MQ=255)aaaTTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACG > 2:115740‑M1/1‑91 (MQ=255) aTTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAG > 2:3587957‑M1/1‑91 (MQ=255) tttCTAAGTAGCAGGTTACGTTCTCGAACACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATACCAAATAAACGAGA > 2:989068‑M1/1‑91 (MQ=255) ttcataaatatgatttaagcgaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATg > 1:122498‑M1/86‑91 (MQ=255) tCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATG > 2:901236‑M1/1‑91 (MQ=255) ttcataaatatgatttaagcgaaaatcactacaaacaatgtcttcctataatttgtaaacatagttcatttgagttttaaaaaaGAGATGa < 2:1426324‑M1/7‑1 (MQ=255) tcataaatatgatttaagcgaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGa < 2:1342699‑M1/7‑1 (MQ=255) cTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGA > 2:2549160‑M1/1‑91 (MQ=255) caagTAGCAGGTTACGTTCTCGATCACAACTATTTTCATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGAC < 2:3847501‑M1/90‑1 (MQ=255) ataaatatgatttaagcgaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACa > 1:3019250‑M1/83‑91 (MQ=255) ataaatatgatttaagcgaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACa < 2:1819085‑M1/9‑1 (MQ=255) aaGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACA > 1:1841579‑M1/1‑91 (MQ=255) aaGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACA > 2:836954‑M1/1‑91 (MQ=255) aGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAt < 2:2290061/91‑1 (MQ=255) tAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTa < 2:1521458/91‑1 (MQ=255) cAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGaa < 1:546312/91‑1 (MQ=255) cAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGaa > 2:3180931/1‑91 (MQ=255) aGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGaaa < 1:2770766/91‑1 (MQ=255) ggTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAAt < 1:1484822/91‑1 (MQ=255) ggTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAAt > 2:2654675/1‑91 (MQ=255) gTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAAtt < 2:3627775/91‑1 (MQ=255) gTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAAtt < 1:901236/91‑1 (MQ=255) aCGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAATATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGa > 2:1756877/1‑91 (MQ=255) aCGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaa < 1:1145653‑M1/91‑13 (MQ=255) agcgaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACA‑‑AGAAATTAGATAtt > 2:2130087‑M1/69‑91 (MQ=255) gaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACA‑‑AGAAATTAGATATTTCt > 2:1590435‑M1/66‑91 (MQ=255) gaaaatcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACA‑‑AGAAATTAGATATTTCt > 2:1588507‑M1/66‑91 (MQ=255) tcGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTc > 1:1038122/1‑91 (MQ=255) gATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTt > 1:2377698‑M2/1‑90 (MQ=255) atcactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTg > 2:2346346‑M1/62‑91 (MQ=255) aTCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtg < 1:789579‑M2/91‑3 (MQ=255) tCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgt < 1:2165421‑M1/91‑23 (MQ=255) tCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgt < 2:3317827‑M1/91‑23 (MQ=255) tCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgt < 1:622944‑M1/91‑23 (MQ=255) tCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgt < 1:1004794‑M2/91‑4 (MQ=255) tCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgt < 2:2475287‑M2/91‑4 (MQ=255) tCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgt < 1:680158‑M2/91‑4 (MQ=255) tCACAACTATTTTTACTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgt < 2:3660778‑M1/91‑23 (MQ=255) cactacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTc > 2:619092‑M1/60‑91 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtc > 2:2583519‑M2/1‑87 (MQ=255) cacaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtc > 2:1111490‑M2/1‑87 (MQ=255) actacaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACA‑‑AGAAATTAGATATTTCTTGTCAtc > 1:932236‑M1/59‑91 (MQ=255) acaACTATTTTTATTAGTAATAGCATATGTATTTTTTAAAATTAAATGCCAAATATGCGAGATGACATTAGAAATTAGATATTTCTtgtca > 2:3599925‑M2/1‑86 (MQ=255) acaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtca < 2:2386473‑M2/91‑6 (MQ=255) acaACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtca > 1:2841553‑M2/1‑86 (MQ=255) aaCTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatc < 1:2517870‑M2/91‑8 (MQ=255) aaCTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatc < 2:421224‑M2/91‑8 (MQ=255) acaaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCAtct > 2:2921278‑M1/56‑91 (MQ=255) cTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgtcatctc < 2:3884326‑M1/91‑29 (MQ=255) cTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatctc > 1:459059‑M2/1‑82 (MQ=255) tATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATctct > 2:2404031/1‑91 (MQ=255) tATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATctct < 1:846851/91‑1 (MQ=255) aaacaatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCATctct > 1:3734006‑M1/54‑91 (MQ=255) aTTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCtt < 2:10555/91‑1 (MQ=255) tttttATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACAagaaatatctaatttctaatgtcatctcgtt < 2:305480‑M1/91‑32 (MQ=255) tttttATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCttt < 2:3246004/91‑1 (MQ=255) caatgtcttcctataatttgtaaacataagttcatttgagttttaaaaaaGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCtttt > 2:2179417‑M1/51‑91 (MQ=255) tttATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAAAGAGATGACAagaaatatctaatttctaatgtcatctcgttta < 1:3590471‑M1/91‑34 (MQ=255) ttattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCtttttt > 2:2874124/1‑91 (MQ=255) tattaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTa > 1:1342699/1‑91 (MQ=255) tattaGTAACAGCATATTTATTTGCTAAAATTAAATGCCAAATGAACGAGTTGAAATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTa < 2:3607885/91‑1 (MQ=255) attaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaa < 2:3061197/91‑1 (MQ=255) attaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaa < 2:3429736/91‑1 (MQ=255) ttaGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTaaa > 2:1640415/1‑91 (MQ=255) aGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAAc < 2:203069/91‑1 (MQ=255) aGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAAc < 1:3148/91‑1 (MQ=255) gTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACt < 2:1076850/91‑1 (MQ=255) gTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACt > 1:2673861/1‑91 (MQ=255) aCAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCaa > 2:744915/1‑91 (MQ=255) aGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACGCAAAt > 2:3142779/1‑91 (MQ=255) gCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATg < 1:258105/91‑1 (MQ=255) tatttattTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAAc > 1:2925987/1‑91 (MQ=255) atttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACt > 1:1002561/1‑91 (MQ=255) atttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACt < 1:2105107/91‑1 (MQ=255) tttatttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACtt < 1:2233542/91‑1 (MQ=255) atttTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATg < 1:894550/91‑1 (MQ=255) ttttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGt > 1:745980/1‑91 (MQ=255) tttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGtt < 2:685415/91‑1 (MQ=255) ttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGttt < 1:3592908/91‑1 (MQ=255) ttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGttt < 2:526519/91‑1 (MQ=255) ttttAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGttt < 2:2905479/91‑1 (MQ=255) tAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACa > 2:2809747/1‑91 (MQ=255) aaaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACaaa < 1:2648589/91‑1 (MQ=255) aaTTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAAt < 1:1259305/91‑1 (MQ=255) aaaTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTATTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATtata > 2:2950363/1‑91 (MQ=255) aTGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAgg > 1:979704/1‑91 (MQ=255) tGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGa < 1:160945/91‑1 (MQ=255) tGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGa > 2:3128951/1‑91 (MQ=255) gCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGaa < 1:1634467/91‑1 (MQ=255) gCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGaa < 1:1415161/91‑1 (MQ=255) gCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGaa < 1:1785876/91‑1 (MQ=255) ccAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAg < 2:2738118/91‑1 (MQ=255) tAAACGAGATGACATTAGAAATTAGATATTTCTtgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaa < 1:2852845‑M2/91‑59 (MQ=255) aaCGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgt > 1:179885/1‑91 (MQ=255) cGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACAttgttt > 1:3414102/1‑91 (MQ=255) gagaTGACATTAGAAATTAGATATTTCTtgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatag < 1:1690810‑M2/91‑64 (MQ=255) gagaTGACATTAGAAATTAGATATTTCTtgtcatctcgtttatttggcatttaattttaaaaaataaatatgctgttactaataaaaatag < 1:1692382‑M2/91‑64 (MQ=255) GAGATGACATTAGAAGTTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACATATGTTTACAAATTATAGGAAGACAttgtttg < 1:3313162‑M1/91‑1 (MQ=255) | AAATTTCTAAGTAGCAGGTTACGTTCTCGATCACAACTATTTTTATTAGTAACAGCATATTTATTTTTTAAAATTAAATGCCAAATAAACGAGATGACATTAGAAATTAGATATTTCTTGTCATCTCTTTTTTAAAACTCAAATGAACTTATGTTTACAAATTATAGGAAGACATTGTTTG > USA300TCH1516_ALE/1970798‑1970978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |